Filename Description -------- ----------- jp__sUo8BY.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp__sUo8BY.als Alscript command file. Used to generate PS/PDF outputjp__sUo8BY.blast.gz PSIBLAST output (compressed) jp__sUo8BY.coils.csv The output from coils in CSV format jp__sUo8BY.coilseq.lupas_14 The output from coils using a window length of 14 jp__sUo8BY.coilseq.lupas_21 The output from coils using a window length of 21 jp__sUo8BY.coilseq.lupas_28 The output from coils using a window length of 28 jp__sUo8BY.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp__sUo8BY.concise.blc A BLC file of the prediction and alignment jp__sUo8BY.concise.pdf A PDF file of the prediction and alignment jp__sUo8BY.fasta Input query sequence in FASTA format jp__sUo8BY.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp__sUo8BY.hmm The HHMer2 profile of the alignment jp__sUo8BY.html A HTML file of the prediction and alignment jp__sUo8BY.input Your raw input jp__sUo8BY.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp__sUo8BY.jnet The output from Jnet jp__sUo8BY.profile PSIBLAST profile jp__sUo8BY.pssm PSIBLAST PSSM in a format for Jnet jp__sUo8BY.seq Your sequence jp__sUo8BY.simple.html The brief HTML output of the query sequence and prediction only jp__sUo8BY.svg.html A Jalview generated SVG file with summary of the results.