SILENT_MODE
BLOCK_FILE jp_RjpIlYx.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_RjpIlYx.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 118 31   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 32 118 41 H SPACE
SUB_CHARS 1 32 118 41 E SPACE
SUB_CHARS 1 32 118 41 - SPACE
STRAND 55 35 56
COLOUR_TEXT_REGION 55 35 56 35 51
STRAND 59 35 60
COLOUR_TEXT_REGION 59 35 60 35 51
STRAND 70 35 76
COLOUR_TEXT_REGION 70 35 76 35 51
STRAND 84 35 89
COLOUR_TEXT_REGION 84 35 89 35 51
STRAND 99 35 104
COLOUR_TEXT_REGION 99 35 104 35 51
STRAND 109 35 109
COLOUR_TEXT_REGION 109 35 109 35 51
HELIX 2 35 23
COLOUR_TEXT_REGION 2 35 23 35 50
HELIX 37 35 38
COLOUR_TEXT_REGION 37 35 38 35 50
HELIX 41 35 51
COLOUR_TEXT_REGION 41 35 51 35 50
HELIX 61 35 64
COLOUR_TEXT_REGION 61 35 64 35 50
STRAND 37 40 38
COLOUR_TEXT_REGION 37 40 38 40 51
STRAND 55 40 56
COLOUR_TEXT_REGION 55 40 56 40 51
STRAND 59 40 62
COLOUR_TEXT_REGION 59 40 62 40 51
STRAND 70 40 76
COLOUR_TEXT_REGION 70 40 76 40 51
STRAND 84 40 89
COLOUR_TEXT_REGION 84 40 89 40 51
STRAND 99 40 104
COLOUR_TEXT_REGION 99 40 104 40 51
STRAND 108 40 109
COLOUR_TEXT_REGION 108 40 109 40 51
HELIX 2 40 12
COLOUR_TEXT_REGION 2 40 12 40 50
HELIX 16 40 23
COLOUR_TEXT_REGION 16 40 23 40 50
HELIX 41 40 51
COLOUR_TEXT_REGION 41 40 51 40 50
HELIX 63 40 64
COLOUR_TEXT_REGION 63 40 64 40 50
STRAND 47 41 48
COLOUR_TEXT_REGION 47 41 48 41 51
STRAND 70 41 77
COLOUR_TEXT_REGION 70 41 77 41 51
STRAND 84 41 89
COLOUR_TEXT_REGION 84 41 89 41 51
STRAND 99 41 104
COLOUR_TEXT_REGION 99 41 104 41 51
HELIX 2 41 22
COLOUR_TEXT_REGION 2 41 22 41 50
HELIX 37 41 41
COLOUR_TEXT_REGION 37 41 41 41 50
HELIX 43 41 43
COLOUR_TEXT_REGION 43 41 43 41 50
HELIX 46 41 46
COLOUR_TEXT_REGION 46 41 46 41 50
HELIX 54 41 64
COLOUR_TEXT_REGION 54 41 64 41 50