Jpred secondary structure prediction results

QUERY           : QLRYEKFFFTVKMTVRSNRPFRTYSDVAAAVSHWDHMYIGMAGKRPFYKILAFLGSSNLKATPAQPEYHAHCEGRAYLPHRMGKTPPMLNVPEHFRRPFNIGLYKGTVELTMTIYDDESLEAAPMIWDHFNSSKFSDFREKALMFGLIVEKKASGAWVLDSVSH : QUERY 
UniRef90_F8SPF3 : QLRYEKFHFSLKMTVRSNKPFRNYDDVAAAVSNWDHMYIGMAGKRPFYKILAFMGSTLLKATPGQPEYHAHCEGRAYLPHRLGPTPPMLNVPEHFRRPFNIGLFRGTIDITLVLFDDESVDSAPVIWDHFNASRLSSFREKALLFGLILEKKATGNWVLDSISH : UniRef90_F8SPF3
UniRef90_P08325 : -LRYEKFRFMLKMTVRSNKPFRSYDDVTAAVSQWDNSYIGMVGKRPFYKIIAVIGSSHLQATPAQPEYYATLTGRCFLPHRLGLIPPMFNVQETFRKPFNIGLYKGTLDFTFTVSDDESNEKVPHVWDYMNPKYQSQIQQEGLKFGLILSKKATGTWVLDQLS- : UniRef90_P08325
UniRef90_Q9WH76 : -----KLQYKCVVNINAINPFRDFREAISAMQFWEADYSGYIGKKPFYRAIILHTARQLKTSNGVVEYHATTQGRALVFHSLGPSPSMMFVPETFTREWNILTNKGTINVKIWLGETDTLSELEPILNPVNFRDDREMIEGAAIMGLEIKKQKDNTWLI-SKSH : UniRef90_Q9WH76
UniRef90_L7Z986 : ------MRYQVEMDVHLDVPLKSMSDLLGLLKNWDIDYRGSRNKRKFYRLILFRCALDLHSTDGSAMYANKVQGCCYVPHRFGHMPAFKREIETFRYPVHQAGYNGVVNLRMSICDLHGEKHGLNLIKECQVISPANFRKYLDLVGLEAACSATGEWILDWTS- : UniRef90_L7Z986
UniRef90_Q85212 : -----KLQYKCVLQVRSESPFTSYLDAVDNVANWEKQYNGFSGKKPFYRAVMVRAVQAMKANPMSPEYTSEIEGRCLVFHSLGHIPPMMYMCEQFTRDWSGRRNQGIVNVKIWVGVTDTLDNLDQIFDPKKHFSEEEMLSAATILGLEVKKSSDNNYII-SKSY : UniRef90_Q85212
UniRef90_M4VS08 : -----KLKYSCEVQVRAIRPFSGVLEAADAIARWEMDYRGFLGKKPFYRLLMGIAIKKLRAAPSSPEYNCLFEGHGAIRHNLGQLPPMSYVSETFTRDWQTDKNKGSVHVKFWLGMLDTNDEMPEILSSKSFQSESELKQIMEMMGIRVKKSKDNKWEILST-- : UniRef90_M4VS08
UniRef90_P04888 : ------MRYHVELDVKLDTPLKTMSDLLGLLKNWDVDYKGSRNKRRFYRLIMFRCALELKSVDGSALYSNKVQGSCYVPHRFGQMPPFKREIEVFRYPVHQHGYNGMVDLRMSICDLNGEKIGLNLLKECQVAHPNHFQKYLEEVGLEAACSATGEWILDWT-- : UniRef90_P04888
UniRef90_I1SV82 : -----KLQYKCSIQLRAEFPFVSYSEVVMALSQWDEEYRGFLGKRPFYRAIILRTSKTLKAVPGRPEYNGEIQGQSSLYHSLGIIPPMMYVPETFMKEWKTAGNRGILIIKIWLGITDTLDTLDPLLHPMIFKSERELVEMAKVFNLDISKGRDNNWII----- : UniRef90_I1SV82
UniRef90_Q5K2K5 : -----KIQYKCSLQVRAETPFTSFNDAARCISLWETDYRGYAGKKPFYRLLMLIATKKLRAAPMSPEYSSMIQGQSIVHHSLGVIPPMMHVPETFTREWNLLTNKGMITAQIWLGITDVVDDLNPLI---NPALFSDEKEMTLMFGLELKKRNDNTWLI-SKSY : UniRef90_Q5K2K5
UniRef90_I1SV89 : -----KLQYKCTIQVRAKKPFVSFLDAAENLSAWENNYKGFLGKKPFYRAIILTTLKKLKVSPNAPEYNGESEGRCLILHSLGIIPPMMYVPEQFTREWSTRDNQGIISVRISVGITDTVDNLEGLFSSPVFLDHKELITAGRMFNLDLKVSPENGWFI-SKSY : UniRef90_I1SV89
UniRef90_K4FCJ4 : -----KVQYKFSLDVAVNYPFANFIEALHGLKHWCDDYRGLFDKRGIYNILMLYAARRLKAGPKSIEYHSTGSGKFTLHHTLKNLFNMDFTSEQFVRSWTDPLRSGTLNFFVWVGETDTQDELPPMIGPAEFSDATEFNTGCEVLGIKIEVQSDNTWVV----- : UniRef90_K4FCJ4
UniRef90_U3LZD6 : --------FRGSLRIVSNKMFKSFEEAVLVSSLWEKDYDGYSGKRPFYRVILLVLIRRLKMSGGIYEYTSEINGRTTIHHDLGNLPEFSSSEEIFTKTWDLNERRGSVKFKIQLGE---VDMDPTLDQILNPSIFSEFLSGCKMLGIEFKEDGD---------- : UniRef90_U3LZD6

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161- :
OrigSeq         : QLRYEKFFFTVKMTVRSNRPFRTYSDVAAAVSHWDHMYIGMAGKRPFYKILAFLGSSNLKATPAQPEYHAHCEGRAYLPHRMGKTPPMLNVPEHFRRPFNIGLYKGTVELTMTIYDDESLEAAPMIWDHFNSSKFSDFREKALMFGLIVEKKASGAWVLDSVSH : OrigSeq

Jnet            : --EEEEEEEEEEEEEEE------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH------EEEEEEE-EEEEEE-------------EEEEEEEE----EEEEEEEEEEEE------------------HHHHHHHHHHH-EEEEE-----EEEEE--- : Jnet
jhmm            : --EEEEEEEEEEEEEEE------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------EEEEE----EEEEE-------------EEEEEEEE----EEEEEEEEEEEEE-----------------HHHHHHHHHHH-EEEEE-----EEEEE--- : jhmm
jpssm           : --EEEEEEEEEEEEEEE------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------E--EEEEEEEE---------------EEEEEEE----EEEEEEEEEEE-------------------HHHHHHHHHHH-HEEEE-----EEEEE--- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---B--B-B-B-B-B-B--BB--B-BBB-BB--BB--B-BB--B--BBBBBBBBBB--B-B----BBB-B-B-B-BBBBB-B--BB-B--B---B---B----B-BBB-BBBBBBBB-----B--BB--B----B--B--BB-BBBB-B-B-----BBB-B--- : Jnet_25
Jnet_5          : ----------B-B-B-B---B--B--BB-BB---------------BB-BBBB-BB--B--------B-B---B-B-B---B------------B----------B-B-B-B-B-----------B-----------B---B--B-B----------BB----- : Jnet_5
Jnet_0          : --------------------------B----------------------BBB-----------------------B-------------------------------B-B---B---------------------------B---------------------- : Jnet_0
Jnet Rel        : 98025888888899985478863689999987588876124477617899999998732478776032302101888516777777777776137889864887178988899852177776654346677542789999988631113334788468984599 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.