SILENT_MODE
BLOCK_FILE jp_IQ6rV0v.concise.blc
MAX_NSEQ 575
MAX_INPUT_LEN 577
OUTPUT_FILE jp_IQ6rV0v.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 105 564   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 565 105 574 H SPACE
SUB_CHARS 1 565 105 574 E SPACE
SUB_CHARS 1 565 105 574 - SPACE
STRAND 29 568 34
COLOUR_TEXT_REGION 29 568 34 568 51
STRAND 42 568 48
COLOUR_TEXT_REGION 42 568 48 568 51
STRAND 56 568 59
COLOUR_TEXT_REGION 56 568 59 568 51
STRAND 70 568 71
COLOUR_TEXT_REGION 70 568 71 568 51
STRAND 98 568 100
COLOUR_TEXT_REGION 98 568 100 568 51
HELIX 13 568 22
COLOUR_TEXT_REGION 13 568 22 568 50
HELIX 81 568 89
COLOUR_TEXT_REGION 81 568 89 568 50
STRAND 30 573 34
COLOUR_TEXT_REGION 30 573 34 573 51
STRAND 42 573 48
COLOUR_TEXT_REGION 42 573 48 573 51
STRAND 55 573 60
COLOUR_TEXT_REGION 55 573 60 573 51
STRAND 69 573 72
COLOUR_TEXT_REGION 69 573 72 573 51
STRAND 98 573 102
COLOUR_TEXT_REGION 98 573 102 573 51
HELIX 13 573 22
COLOUR_TEXT_REGION 13 573 22 573 50
HELIX 81 573 90
COLOUR_TEXT_REGION 81 573 90 573 50
STRAND 29 574 34
COLOUR_TEXT_REGION 29 574 34 574 51
STRAND 42 574 45
COLOUR_TEXT_REGION 42 574 45 574 51
STRAND 97 574 99
COLOUR_TEXT_REGION 97 574 99 574 51
HELIX 13 574 22
COLOUR_TEXT_REGION 13 574 22 574 50
HELIX 46 574 49
COLOUR_TEXT_REGION 46 574 49 574 50
HELIX 81 574 88
COLOUR_TEXT_REGION 81 574 88 574 50