SILENT_MODE BLOCK_FILE jp_c5QV3yx.concise.blc MAX_NSEQ 393 MAX_INPUT_LEN 395 OUTPUT_FILE jp_c5QV3yx.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 99 382 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 383 99 392 H SPACE SUB_CHARS 1 383 99 392 E SPACE SUB_CHARS 1 383 99 392 - SPACE STRAND 88 386 89 COLOUR_TEXT_REGION 88 386 89 386 51 HELIX 3 386 11 COLOUR_TEXT_REGION 3 386 11 386 50 HELIX 21 386 26 COLOUR_TEXT_REGION 21 386 26 386 50 HELIX 41 386 55 COLOUR_TEXT_REGION 41 386 55 386 50 HELIX 60 386 73 COLOUR_TEXT_REGION 60 386 73 386 50 HELIX 76 386 87 COLOUR_TEXT_REGION 76 386 87 386 50 STRAND 87 391 89 COLOUR_TEXT_REGION 87 391 89 391 51 HELIX 3 391 10 COLOUR_TEXT_REGION 3 391 10 391 50 HELIX 21 391 26 COLOUR_TEXT_REGION 21 391 26 391 50 HELIX 41 391 55 COLOUR_TEXT_REGION 41 391 55 391 50 HELIX 60 391 73 COLOUR_TEXT_REGION 60 391 73 391 50 HELIX 76 391 86 COLOUR_TEXT_REGION 76 391 86 391 50 STRAND 35 392 36 COLOUR_TEXT_REGION 35 392 36 392 51 STRAND 89 392 89 COLOUR_TEXT_REGION 89 392 89 392 51 STRAND 96 392 96 COLOUR_TEXT_REGION 96 392 96 392 51 HELIX 3 392 11 COLOUR_TEXT_REGION 3 392 11 392 50 HELIX 21 392 25 COLOUR_TEXT_REGION 21 392 25 392 50 HELIX 41 392 54 COLOUR_TEXT_REGION 41 392 54 392 50 HELIX 60 392 73 COLOUR_TEXT_REGION 60 392 73 392 50 HELIX 76 392 88 COLOUR_TEXT_REGION 76 392 88 392 50