SILENT_MODE
BLOCK_FILE jp_SCqAGyL.concise.blc
MAX_NSEQ 148
MAX_INPUT_LEN 150
OUTPUT_FILE jp_SCqAGyL.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 150 137   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 138 150 147 H SPACE
SUB_CHARS 1 138 150 147 E SPACE
SUB_CHARS 1 138 150 147 - SPACE
STRAND 11 141 19
COLOUR_TEXT_REGION 11 141 19 141 51
STRAND 24 141 30
COLOUR_TEXT_REGION 24 141 30 141 51
STRAND 36 141 38
COLOUR_TEXT_REGION 36 141 38 141 51
STRAND 47 141 51
COLOUR_TEXT_REGION 47 141 51 141 51
STRAND 57 141 62
COLOUR_TEXT_REGION 57 141 62 141 51
STRAND 68 141 71
COLOUR_TEXT_REGION 68 141 71 141 51
STRAND 75 141 79
COLOUR_TEXT_REGION 75 141 79 141 51
STRAND 87 141 94
COLOUR_TEXT_REGION 87 141 94 141 51
HELIX 98 141 110
COLOUR_TEXT_REGION 98 141 110 141 50
HELIX 123 141 148
COLOUR_TEXT_REGION 123 141 148 141 50
STRAND 5 146 6
COLOUR_TEXT_REGION 5 146 6 146 51
STRAND 12 146 19
COLOUR_TEXT_REGION 12 146 19 146 51
STRAND 24 146 30
COLOUR_TEXT_REGION 24 146 30 146 51
STRAND 36 146 40
COLOUR_TEXT_REGION 36 146 40 146 51
STRAND 47 146 52
COLOUR_TEXT_REGION 47 146 52 146 51
STRAND 57 146 62
COLOUR_TEXT_REGION 57 146 62 146 51
STRAND 68 146 71
COLOUR_TEXT_REGION 68 146 71 146 51
STRAND 76 146 79
COLOUR_TEXT_REGION 76 146 79 146 51
STRAND 87 146 94
COLOUR_TEXT_REGION 87 146 94 146 51
HELIX 98 146 110
COLOUR_TEXT_REGION 98 146 110 146 50
HELIX 123 146 132
COLOUR_TEXT_REGION 123 146 132 146 50
HELIX 136 146 148
COLOUR_TEXT_REGION 136 146 148 146 50
STRAND 11 147 19
COLOUR_TEXT_REGION 11 147 19 147 51
STRAND 24 147 30
COLOUR_TEXT_REGION 24 147 30 147 51
STRAND 36 147 37
COLOUR_TEXT_REGION 36 147 37 147 51
STRAND 48 147 50
COLOUR_TEXT_REGION 48 147 50 147 51
STRAND 57 147 62
COLOUR_TEXT_REGION 57 147 62 147 51
STRAND 68 147 71
COLOUR_TEXT_REGION 68 147 71 147 51
STRAND 75 147 79
COLOUR_TEXT_REGION 75 147 79 147 51
STRAND 86 147 94
COLOUR_TEXT_REGION 86 147 94 147 51
HELIX 95 147 110
COLOUR_TEXT_REGION 95 147 110 147 50
HELIX 123 147 148
COLOUR_TEXT_REGION 123 147 148 147 50