SILENT_MODE
BLOCK_FILE jp_JSBg7ZE.concise.blc
MAX_NSEQ 145
MAX_INPUT_LEN 147
OUTPUT_FILE jp_JSBg7ZE.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 145 134   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 135 145 144 H SPACE
SUB_CHARS 1 135 145 144 E SPACE
SUB_CHARS 1 135 145 144 - SPACE
STRAND 106 138 108
COLOUR_TEXT_REGION 106 138 108 138 51
HELIX 13 138 22
COLOUR_TEXT_REGION 13 138 22 138 50
HELIX 31 138 53
COLOUR_TEXT_REGION 31 138 53 138 50
HELIX 59 138 64
COLOUR_TEXT_REGION 59 138 64 138 50
HELIX 71 138 81
COLOUR_TEXT_REGION 71 138 81 138 50
HELIX 95 138 101
COLOUR_TEXT_REGION 95 138 101 138 50
HELIX 113 138 126
COLOUR_TEXT_REGION 113 138 126 138 50
HELIX 132 138 140
COLOUR_TEXT_REGION 132 138 140 138 50
STRAND 106 143 108
COLOUR_TEXT_REGION 106 143 108 143 51
HELIX 13 143 22
COLOUR_TEXT_REGION 13 143 22 143 50
HELIX 31 143 53
COLOUR_TEXT_REGION 31 143 53 143 50
HELIX 59 143 64
COLOUR_TEXT_REGION 59 143 64 143 50
HELIX 71 143 81
COLOUR_TEXT_REGION 71 143 81 143 50
HELIX 95 143 101
COLOUR_TEXT_REGION 95 143 101 143 50
HELIX 113 143 125
COLOUR_TEXT_REGION 113 143 125 143 50
HELIX 131 143 140
COLOUR_TEXT_REGION 131 143 140 143 50
STRAND 85 144 89
COLOUR_TEXT_REGION 85 144 89 144 51
STRAND 106 144 108
COLOUR_TEXT_REGION 106 144 108 144 51
HELIX 13 144 22
COLOUR_TEXT_REGION 13 144 22 144 50
HELIX 31 144 43
COLOUR_TEXT_REGION 31 144 43 144 50
HELIX 45 144 52
COLOUR_TEXT_REGION 45 144 52 144 50
HELIX 59 144 64
COLOUR_TEXT_REGION 59 144 64 144 50
HELIX 71 144 81
COLOUR_TEXT_REGION 71 144 81 144 50
HELIX 95 144 102
COLOUR_TEXT_REGION 95 144 102 144 50
HELIX 113 144 129
COLOUR_TEXT_REGION 113 144 129 144 50
HELIX 133 144 140
COLOUR_TEXT_REGION 133 144 140 144 50