QUERY : GIIINLDEGELCLNSAQCKSNCCQHDTILSLSRCALKAR : QUERY
UniRef90_UPI0003F0649D : GLVVNLEEGELCLNSVQCKSKCCHRDTGLSLARCMPKA- : UniRef90_UPI0003F0649D
UniRef90_G1L125 : GIIINLEDGELCLNSAQCKSSCCQRDTGLSLARCASKAR : UniRef90_G1L125
UniRef90_P42889 : GLIINLDNGELCLNSAQCKSQCCQHDSPLGLARCADKAR : UniRef90_P42889
UniRef90_F6X7L4 : GLIIHLDNGELCVNSLQCKSKCCHRTSGLSLARCADKA- : UniRef90_F6X7L4
UniRef90_UPI0002C442FD : GIIISLEDGELCLNSYQCKSRCCHHSTGLSLARCAPKS- : UniRef90_UPI0002C442FD
UniRef90_G3TP15 : GIIINLENGELCVNSYQCKSQCCHHDSALSLSRCTAKAR : UniRef90_G3TP15
UniRef90_UPI0004446E8B : GIFINLDEGELCLNSAQCKSHCCHRPTGMSLARCAPKS- : UniRef90_UPI0004446E8B
UniRef90_UPI00038F1819 : GIIINLEDGELCVNSGQCKSKCCQHDSPLSLARCVQKAR : UniRef90_UPI00038F1819
UniRef90_UPI000440A4FD : GIIINLKNGELCLFSVQCKSSCCHRPSGLSLARCAPRA- : UniRef90_UPI000440A4FD
UniRef90_UPI0003955BF7 : GLIFNLEIGELCLQSAQCKSGCCHRINGLSLARCASKA- : UniRef90_UPI0003955BF7
UniRef90_F7HYJ9 : GLVIHLEEGELCLNSAQCKSKCCHHTSALSLARCAPLA- : UniRef90_F7HYJ9
UniRef90_Q9CQC2 : GLIINLEDGEICLNSMQCKSRCCQHDTILGIARCTHKA- : UniRef90_Q9CQC2
UniRef90_UPI0001777C96 : GIIINLENGELCLNSAQCKSGCCQHSSALSLARCEDKA- : UniRef90_UPI0001777C96
UniRef90_P02705 : GVIINLEAGEICMNSAQCKSECCHRESSLSLARCAAKA- : UniRef90_P02705
UniRef90_UPI0004418DA2 : GLVWNLKNGELCLHSQQCNSRCCHRTDGLSFARCADKA- : UniRef90_UPI0004418DA2
UniRef90_H0VQD7 : GLFFNLDDGELCLNSGQCKSQCCQQDTLLALARCTRKA- : UniRef90_H0VQD7
UniRef90_U3I780 : GLIFNLDTGELCLQSAQCKSGCCQRDSGLSLARCVPKA- : UniRef90_U3I780
UniRef90_S7NIW4 : GIIVNLSSGSAWLREAQCKSKCCHRTSGLSLARCAPKA- : UniRef90_S7NIW4
UniRef90_K4FSK1 : GLFLNLDNGELCIGSFQCKSDCCQRDTALSLSRCFSKG- : UniRef90_K4FSK1
UniRef90_Q91XL7 : GILINLEDGEICMNSAQCKSSCCQHFSPLGVARCTRKA- : UniRef90_Q91XL7
UniRef90_F6SG32 : ----NLENGELCMNSAQCKSQCCQHTGALDLARCIPLA- : UniRef90_F6SG32
UniRef90_E3TF71 : GIITNLNNGELCAVSLQCKSSCCKRKSTLGLARCAPRA- : UniRef90_E3TF71
UniRef90_UPI0002C556B0 : ----NLENGELCANSAQCKSKCCRHDTLLSLARCAPKA- : UniRef90_UPI0002C556B0
UniRef90_UPI0004549FF9 : ------DDGEICMNSMQCKSKCCQHDTILGIARCTHQA- : UniRef90_UPI0004549FF9
UniRef90_H0YTV1 : ------DIGELCMQSVQCKSGCCHRDRGLSLARCAPRA- : UniRef90_H0YTV1
UniRef90_P04118 : ----NLENGELCMNSAQCKSNCCQHSSALGLARCTSMA- : UniRef90_P04118
UniRef90_UPI0003C1547D : --FINLDNGELCLEGIQCKSGCCFRRNGLDLARCAS--- : UniRef90_UPI0003C1547D
UniRef90_R7VN27 : --------GELCLQSAQCESGCCHRQDGLSLARCAPKA- : UniRef90_R7VN27
UniRef90_P11149 : GLFLNLSAGELCVGSFQCKSSCCQRETGLSLARCA---- : UniRef90_P11149
UniRef90_P11148 : GLIFNLDTGELCLQSAQCKSECCQEDSGLSLAXC----- : UniRef90_P11148
UniRef90_UPI0003EBB8D0 : ------------------KSKCCHRTSGLSLARCAPKA- : UniRef90_UPI0003EBB8D0
UniRef90_UPI000395720B : GLVFNLDTGELCLQSAQCKSGCC---------------- : UniRef90_UPI000395720B
: 1---------11--------21--------31------- :
OrigSeq : GIIINLDEGELCLNSAQCKSNCCQHDTILSLSRCALKAR : OrigSeq
Jnet : --EEE-----EEHHHHH---------------------- : Jnet
jhmm : --EEE-----EEE-------------------------- : jhmm
jpssm : --EEE----HHHHHHHHH--------------------- : jpssm
Lupas 14 : --------------------------------------- : Lupas 14
Lupas 21 : --------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------- : Lupas 28
Jnet_25 : -B---B--B-BBB--B-B---BB----BB-BB-B----- : Jnet_25
Jnet_5 : --------B--BB-----------------BB-B----- : Jnet_5
Jnet_0 : --------------------------------------- : Jnet_0
Jnet Rel : 835744786311022110046777777666532567899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.