QUERY : KSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQIDQGAEDVVMAFSRSETED : QUERY
UniRef90_V9LEC7 : KLPRDVYTQQKVEVLTALRKLGEKLTPEEEGFLSANTSATLSQFEKVSLGAGDKVFALASRGVEN : UniRef90_V9LEC7
UniRef90_J3S4L9 : KLGRDLYTQQKVEILTALRKLGEQLTPNDEAFLSTNAGTALSQFEKVDLGSGDKVFALASFEVE- : UniRef90_J3S4L9
UniRef90_UPI0004444127 : KLERDLYTQQKVEILAALRRLGEKLTVDDEAFLSAHAGAILSQFESVDLGSGDKVLALASSEVE- : UniRef90_UPI0004444127
UniRef90_Q8K3C3 : KLERELYTQRKVEILTALRKLGEKLTEDDETFLSANASAVLSQFEKVSLGSGDKVLALAGFDVE- : UniRef90_Q8K3C3
UniRef90_H2TSD9 : KLPRDVYTQQKMEILTALRKLGEKLTADDEAFLSENATATLSQFEKVTLGSEDKIMALASSGSE- : UniRef90_H2TSD9
UniRef90_Q28D79 : KLGRDLYTQQKGEILIALQKLGEKLSPEDEAFLSENAGAVFNQFQKVSLGSGDKVLALASIEVEN : UniRef90_Q28D79
UniRef90_UPI00027F9AB0 : KLERDLYTQQKVEMLTALRKLGEKLTAANEAFLSANAGTILSQFEKTDPGSGDKVLALASFEVE- : UniRef90_UPI00027F9AB0
UniRef90_Q4RVP5 : KSPEDMYIQQKVRVLLMLKKMGSNLTPSEEAFLRNYAGVVHSQMSQLPQHNIDQGKALKVPQV-- : UniRef90_Q4RVP5
UniRef90_H2LKY8 : KLSRDGHTQQKMEILTALRKLGEKLTAEDETFLTQNATATLSQFEKVNSGSEDKILALASSSVK- : UniRef90_H2LKY8
UniRef90_F4PQ64 : KISKDSYIDQSIEILYALKKLGFAISPEEENFLEQHKSRVMGDFEKVSQGTKDNLMSNAATQIQ- : UniRef90_F4PQ64
UniRef90_UPI0004431C01 : KLERDIYTQQKLEILTALRKLGEKLTSDDEAFLSTNAGAALSQFEKVS----------------- : UniRef90_UPI0004431C01
UniRef90_S4RDF7 : KLPRDVYSLQKAETLMALRKLGDALSAEEEAFLSANASAALSQLERVDLGSADKVLALASSEV-- : UniRef90_S4RDF7
UniRef90_K1Q4N0 : KLSGDVSTQQSVEILTALKKLGESLTPEEESYLQSNSSASLKQFEQVDLASGDKVLAVASSQVK- : UniRef90_K1Q4N0
UniRef90_UPI0003597D26 : KLPKELAIQQSVEILTALKKLGEQLTAPETAYLEQHSSGSLRQFEKVDLGSGEKVLAVAGSQVE- : UniRef90_UPI0003597D26
UniRef90_B3RZU2 : KLAVDVYKQQKLEILTALKKLGDKLSPEESAFLADNATASLNQFEQVDIGTTENVLAVAGSQVSE : UniRef90_B3RZU2
UniRef90_I1G864 : KITEDTLTQQKVEILVALRKLGEKLTAEELDFLSAHSTAALSQFEKIDTAAGEKVLAIAGTQVK- : UniRef90_I1G864
UniRef90_Q4H117 : KLSEDVYNQQAVEILAALRKLGEKLSPIEIDFLTSHSSAAISAFEKVSQASGEKVLAMAGSQIE- : UniRef90_Q4H117
UniRef90_UPI0003F070F7 : KITQDVCTQQKVEILTALKKLGDKLTPTEEAFLTSNSNKALNDFEKVTGESGDKILAMAGSQVQE : UniRef90_UPI0003F070F7
UniRef90_UPI000265332A : KASTLVYRQQGVEILTALRKLGETLTPSENEFLMSNSNQALSDFEKVTGDVGGDILKVAGSQVQD : UniRef90_UPI000265332A
UniRef90_L5KIF3 : KSPEDVYVQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVASSQLSQLPQHPIDQ----------- : UniRef90_L5KIF3
UniRef90_H2Z7E7 : KLVKDSYIQQKVEILTAVAKLGENLTPEEQSFMLQHSSTSLSNFQNVDESSEANVLAAAEHDI-- : UniRef90_H2Z7E7
UniRef90_Q54ID4 : KISKDAYIDQSVEILAALKKLDFVLSPEEEAFLEKHKSRSMSEFEKVSQGTKENILSSAASQIKN : UniRef90_Q54ID4
UniRef90_A7T0N0 : -MGQSVYTQQAIEILMALKKLGEQLKPEETEFLAANSNAALSSFEKVNSGAGASLLKVAGSQVED : UniRef90_A7T0N0
UniRef90_S4ANA8 : KLAEPDFQQQSVEILVALRNLGEQLSPAEVEFLNKHSSGSLNNFEKVSSDAGDKVLSAAGSQV-- : UniRef90_S4ANA8
UniRef90_D3AWG0 : KLSKDSYIDQSLEILVALKKLGFTLSPEEENFLEQHKSRSMSDFEKIAQGTQANILSSAATQIQ- : UniRef90_D3AWG0
UniRef90_R7TEI3 : KLSADSATLQTVEILTALKKLGEKLSVEEDAFLHTHSSNSLKQFEEVTEIXGGNLLAVAGSQVQ- : UniRef90_R7TEI3
UniRef90_F2U8Y3 : -ISKESAIEQKVEILTALRQLGEQISPEEVQFLTQHSTAALDEFQRVSGELNANVLAKAGSQVQ- : UniRef90_F2U8Y3
UniRef90_L8GJP4 : KLSSDAYTQQALEILTALKKLGETLSAEELHFLSANMTASLSAFERVDIGKGTQVLSVAGNQIK- : UniRef90_L8GJP4
UniRef90_T2M8J8 : KLCGVFYQQQIVEILSALKKLGEVLTHSEEEYLRKNASAKLYQFSNVSETIGDSLLKVVHKEVK- : UniRef90_T2M8J8
UniRef90_A9UPF0 : KISAQQQTEQKVEILTALRKLGEQISPEEAQFLSANSSAALDEFEQVSSNLG------------- : UniRef90_A9UPF0
UniRef90_T1K7K6 : KLSRDNFDERRCEILLALKKLGENLTPDQISVIERHSSIAMKDFHKVDNNISDQLLKETGSNLK- : UniRef90_T1K7K6
UniRef90_UPI00026595C2 : KIALEPYNREKVEILLALRKLGDTLSPGENSFIENHSSASMKQFEKIDENSDRKLFQLAATSTD- : UniRef90_UPI00026595C2
UniRef90_L9L130 : -----------------LRTRLAELTADDEAFLSANAGAILSQFEKVDLGSGDKVLALASFEVE- : UniRef90_L9L130
UniRef90_W4XSK3 : -----------------LRQRLADLTPSENEFLMSNSNQALSDFEKVTGDVGGDILKVAGSQVQD : UniRef90_W4XSK3
UniRef90_F6YYT8 : KLERDLYTQQKVEILTALRKLGEKVPKKEVFGIVSALEIIFLFYVSFFLGSGDKILALASFEVE- : UniRef90_F6YYT8
UniRef90_T1IJC0 : KLSLAIAIQQKVEILTALRKLEEPLNATELQFLQNYASDSMKEYEQVTEEASSKILEMAGSKIQ- : UniRef90_T1IJC0
UniRef90_F1LAB1 : KISGEVHNARKAEILYALLKMGAELSREEDAFLSNYSKISSANFE-------------------- : UniRef90_F1LAB1
: 1---------11--------21--------31--------41--------51--------61--- :
OrigSeq : KSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQIDQGAEDVVMAFSRSETED : OrigSeq
Jnet : ------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----HHHHHHHHH------ : Jnet
jhmm : ------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHH------ : jhmm
jpssm : -----HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-------EEEEEEEE----- : jpssm
Lupas 14 : ----------------------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------------------- : Lupas 28
Jnet_25 : ------B---BBBBBBBB--B---B---B--BB--BB--BB--B--B---B---BB-BB---B-- : Jnet_25
Jnet_5 : -----------B-BB-BB--------------B---------------------B---------- : Jnet_5
Jnet_0 : -------------BB-------------------------------------------------- : Jnet_0
Jnet Rel : 99972279999999999998127787223789998755898862021837034433331158999 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.