SILENT_MODE
BLOCK_FILE jp_SHa3wDM.concise.blc
MAX_NSEQ 1006
MAX_INPUT_LEN 1008
OUTPUT_FILE jp_SHa3wDM.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 107 995   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 996 107 1005 H SPACE
SUB_CHARS 1 996 107 1005 E SPACE
SUB_CHARS 1 996 107 1005 - SPACE
STRAND 5 999 10
COLOUR_TEXT_REGION 5 999 10 999 51
STRAND 23 999 29
COLOUR_TEXT_REGION 23 999 29 999 51
STRAND 40 999 45
COLOUR_TEXT_REGION 40 999 45 999 51
STRAND 56 999 57
COLOUR_TEXT_REGION 56 999 57 999 51
STRAND 67 999 71
COLOUR_TEXT_REGION 67 999 71 999 51
STRAND 75 999 76
COLOUR_TEXT_REGION 75 999 76 999 51
STRAND 86 999 88
COLOUR_TEXT_REGION 86 999 88 999 51
HELIX 82 999 82
COLOUR_TEXT_REGION 82 999 82 999 50
HELIX 92 999 105
COLOUR_TEXT_REGION 92 999 105 999 50
STRAND 4 1004 10
COLOUR_TEXT_REGION 4 1004 10 1004 51
STRAND 23 1004 29
COLOUR_TEXT_REGION 23 1004 29 1004 51
STRAND 40 1004 45
COLOUR_TEXT_REGION 40 1004 45 1004 51
STRAND 55 1004 58
COLOUR_TEXT_REGION 55 1004 58 1004 51
STRAND 67 1004 71
COLOUR_TEXT_REGION 67 1004 71 1004 51
STRAND 75 1004 76
COLOUR_TEXT_REGION 75 1004 76 1004 51
STRAND 86 1004 89
COLOUR_TEXT_REGION 86 1004 89 1004 51
HELIX 92 1004 105
COLOUR_TEXT_REGION 92 1004 105 1004 50
STRAND 5 1005 10
COLOUR_TEXT_REGION 5 1005 10 1005 51
STRAND 23 1005 28
COLOUR_TEXT_REGION 23 1005 28 1005 51
STRAND 40 1005 44
COLOUR_TEXT_REGION 40 1005 44 1005 51
STRAND 68 1005 72
COLOUR_TEXT_REGION 68 1005 72 1005 51
STRAND 86 1005 86
COLOUR_TEXT_REGION 86 1005 86 1005 51
HELIX 79 1005 85
COLOUR_TEXT_REGION 79 1005 85 1005 50
HELIX 92 1005 105
COLOUR_TEXT_REGION 92 1005 105 1005 50