SILENT_MODE
BLOCK_FILE jp_ebsMquO.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_ebsMquO.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 193 36   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 37 193 46 H SPACE
SUB_CHARS 1 37 193 46 E SPACE
SUB_CHARS 1 37 193 46 - SPACE
STRAND 4 40 11
COLOUR_TEXT_REGION 4 40 11 40 51
STRAND 77 40 82
COLOUR_TEXT_REGION 77 40 82 40 51
STRAND 89 40 95
COLOUR_TEXT_REGION 89 40 95 40 51
STRAND 131 40 135
COLOUR_TEXT_REGION 131 40 135 40 51
STRAND 142 40 145
COLOUR_TEXT_REGION 142 40 145 40 51
STRAND 162 40 166
COLOUR_TEXT_REGION 162 40 166 40 51
HELIX 50 40 70
COLOUR_TEXT_REGION 50 40 70 40 50
HELIX 102 40 120
COLOUR_TEXT_REGION 102 40 120 40 50
HELIX 151 40 154
COLOUR_TEXT_REGION 151 40 154 40 50
HELIX 172 40 190
COLOUR_TEXT_REGION 172 40 190 40 50
STRAND 4 45 10
COLOUR_TEXT_REGION 4 45 10 45 51
STRAND 77 45 82
COLOUR_TEXT_REGION 77 45 82 45 51
STRAND 89 45 95
COLOUR_TEXT_REGION 89 45 95 45 51
STRAND 131 45 135
COLOUR_TEXT_REGION 131 45 135 45 51
STRAND 143 45 145
COLOUR_TEXT_REGION 143 45 145 45 51
STRAND 162 45 166
COLOUR_TEXT_REGION 162 45 166 45 51
HELIX 51 45 70
COLOUR_TEXT_REGION 51 45 70 45 50
HELIX 102 45 120
COLOUR_TEXT_REGION 102 45 120 45 50
HELIX 151 45 154
COLOUR_TEXT_REGION 151 45 154 45 50
HELIX 172 45 190
COLOUR_TEXT_REGION 172 45 190 45 50
STRAND 4 46 11
COLOUR_TEXT_REGION 4 46 11 46 51
STRAND 77 46 82
COLOUR_TEXT_REGION 77 46 82 46 51
STRAND 89 46 95
COLOUR_TEXT_REGION 89 46 95 46 51
STRAND 131 46 136
COLOUR_TEXT_REGION 131 46 136 46 51
STRAND 142 46 145
COLOUR_TEXT_REGION 142 46 145 46 51
STRAND 162 46 167
COLOUR_TEXT_REGION 162 46 167 46 51
HELIX 50 46 70
COLOUR_TEXT_REGION 50 46 70 46 50
HELIX 103 46 119
COLOUR_TEXT_REGION 103 46 119 46 50
HELIX 150 46 154
COLOUR_TEXT_REGION 150 46 154 46 50
HELIX 172 46 177
COLOUR_TEXT_REGION 172 46 177 46 50
HELIX 179 46 191
COLOUR_TEXT_REGION 179 46 191 46 50