Jpred secondary structure prediction results

QUERY                  : MATFYEVIVRVPFDVEEHLPGISDSFVDWVTGQIWELPPESDLNLTLVEQPQLTVADRIRRVFLYEWNKFSKQESKFFVQFEKGSEYFHLHTLVETSGISSMVLGRYVSQIRAQLVKVVFQGIEPQINDWVAITKVKKGGANKVVDSGYIPAYLLPKVQPELQWAWTNLDEYKLAALNLEERKRLVAQFLAES : QUERY 
UniRef90_Q89268        : MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTRNGGGNKVVDECYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLT-- : UniRef90_Q89268
UniRef90_G1JYZ2        : MASFYEVVAKIPSDLEEHLPGICDDFVSVIMSKEWRLPESSDLVLDQIDQPKLTIADAVRKVFYFEWLKYCREEPLFFFQFEKGKENFHVHMVIETSNVSSMVLGRYIGTIKKKLVRKVFREVEPQMPDWLAVTKTKQSGGNKTYDKGYIPAYLLPKTQPELQWAWTNIEEYKSASLNLAERKRLVDEFLA-- : UniRef90_G1JYZ2
UniRef90_C7FFR9        : MRSYYEVIVQLPNDVESQVPGISDSFVNWITSREWTLPEDADWDLDQVDQVQLTLGDKIQREIRNHWGTMAKEPDHYFIQLEQGEVFFHLHVLLETCSVKPMVLGRYIRHIQQKIVSKVYCGHEPAMEGWMRVTKTKNGGANKVRAESYIPAYLIPKQQPEVQWAWTNVPEYIKACLHRELRASLARLHFEEA : UniRef90_C7FFR9
UniRef90_A5A0V5        : ---FYEVIIRLPSDIDQDVPGLSLNFVEWLSTGVWE--PTGIWNMEHVNLPMVTLAEKIKNIFIQRWNQFNQDETDFFFQLEEGSEYIHLHCCIAQGNVRSFVLGRYMSQIKDSIIRDVYEGKQIKIPDWFAITKTKSGGQNKTVTATYILHYLIPKKQPELQWAFTNMPLFTAAALCLQKRQELLDAFQE-- : UniRef90_A5A0V5
UniRef90_UPI000333E26F : MVQFYELIVRIPSDVEQHLPKIPDSFVAWIATTEWTLPDDSDLVLSEIEQAQLTIANKVRLQIIKEWKEITKINPKFFVQFEKGTDFFHLHILIETTNMKSMVLGRYLNQIKSKVVTLVYENMEPAIPLWMAATKTSQGGANKVLNQSYIPAYLLGKSQPELQWAWTNIKEYKRVALNLSERKRLVEEH---- : UniRef90_UPI000333E26F
UniRef90_E0XJJ4        : ---FYSIVLRLPGDFDSEVPGLQDSFYKWISGPRRELPEWSDLDPGQIESAYQILADKLVREFAQKWAAFSEDPAPYFAQLEKGRENFHVHVLASSKKVGSFVVGRYVRKMRQHLVDVVFRKCEPVDADWLQVQKSGNHKSNEIKDEGFIPAYLLPKRQSELQWAWTNIEKYERATLSVAERARLVEEW---- : UniRef90_E0XJJ4
UniRef90_Q00683        : ---YIMLTIKGPMEWEAEIPGISTDFFCKFSNVS--VPHFRDMHSPGAPDIWITACTKMIDVILNYWNNKTATPAKWYAQAENKAGRPSLILLIALDGIPSATIGKHTTEIRGVLIKDFFDGNAPKIDDWCTYAKTKKGGGTQVFSLSYIPFALLQIIRPQFQWAWTNINELGDVCDEI-HRKHIISHF---- : UniRef90_Q00683
UniRef90_I3VQC2        : ---FIMLNIYGPVDWSSEIPGLSEAFYTDMDNRDFELEERRDLN-----RRWLSVCEKILPIVLTYWKALTSEPAQWFAQAECYDDRPLMKLMLQIGAGTSLSLSRHLTHMRRLIIARVYEDHHPMMGEWFFVSRTGLSGGNRVFELDYITSTLLQVTVPIYQWSWTNITTLTDAQLS--ARNHL-------- : UniRef90_I3VQC2
UniRef90_K4K1Y8        : -------VLKIPGVYEGEVPVSTRDFMKWPDSGAAPAAPRDEIDSNLVT--AVRQGEALFRELQKELRKSCRVDPGIFMQLERSKGGLHLHWCVSVSAGTPRDVLTIFKNTEKK-VSLYYFGVE---GLSFFVPHKNKHGAWKSTDEGFIYNYLLKKLPLECLYAWTTIGGIGEACLNTEKRKELLDNRQDPA : UniRef90_K4K1Y8
UniRef90_Q9J0X7        : -----------------------TANITDFANDSWWC---SFLQLDSDDWPELRGVERLVAIFICKVAAVLDNPCKYFLQAEHYDAGFHVHIVI----GGPFINARNVCNAVETTFNKVLGDLDPSMSVQFKPAVSKKGEYYRD-GFDFVTNYLMPKLYPNVIYSVTNLEEYQYVCNSLCYRKNMHKQHM--- : UniRef90_Q9J0X7
UniRef90_P87583        : ------AVIKLPCPLEEVLSNLCKDPLDWPALQVTELAH--GWEVG----AYCAFADAL---YLYLVGRLADEFSAYFFQLEPGVENPHIHVVAQATQLSAFNWRRILTQACHDMA---LGFLKPDYLGWAKCVNIKKDKSGRILDWQFVETYLLPKVPLSKVWAWTNKPEFEPIALSAAARDRLMR------ : UniRef90_P87583
UniRef90_H9A287        : -----------------------------LDLSDWPVEEFREFIPNW--QRAVNLGQKVFEELFHQVTLPCRNVPQLFMQLEPSSSEMHFHIVVBQGDMLGREFANWLKMXKIYMAQYV------TSVNWPLSWDIRKTRQGRLYDMGFVTKYLLPKLPLQHCYAWTNIARFESAALSVRDRQRI-------- : UniRef90_H9A287
UniRef90_W8SKH2        : ----------------------------------------------------VLQGEALFRETLKEVRKVCRLPPHLFFQLEKSKGGLHLHFCISVAAGTPRDVSSMFKAIERR-VSFYYFGVE---GLTFFTPHKNKHGAWKSNDEGFIVNYLLKKLPLECVYAWTNMDGIGDACLNEDKRRELLSERQDQ- : UniRef90_W8SKH2
UniRef90_Q88271        : -----------------------NANFTDFANDNWWC---CFFQLDVDDWPELRGPERLMAHYICKVAALLDTPCKYFLQVEGNDNGFHIHVVIGGPFLTPRNV---CSAVEGGFNKVLADFTSPTITVQFKPAVSKKGKYHRD-GFDFVTYYLMPKLYPNVIYSVTNLEEYQYVCNSLCYRRTMHKRQQ--- : UniRef90_Q88271
UniRef90_G8E0N6        : -ASCFTAVLQIPTLFCESVPVQVESPAILLRSVADDYPDWPVADLQQYADLAVNLGHILYRELLESFAMLLPLTPKLFLQLEPSNSEFHYHLVCEQGDMSGREFSTWLKRWRTFMDRYMAGGH-----VWTLLWNIRKTRQGRLYDLSFVVRYLLPKLPVENCWAWSNIERFQASLLSVPNRVRCLGE----- : UniRef90_G8E0N6
UniRef90_B4XXD9        : --------------------------------EDWPV---SDLQSSEYFDIGVNLGRIIYRELLESFAMILHRSPKLFLQLEPSSSEFHYHLVAEQGNVSGREFSNWLKRWATFLTRHMAPGHS-----WSILWDIRKTRQGRLYDLTFVLRYLLPKVPVEHVWAWTNMDRFEAAALSVPARVRCLSE----- : UniRef90_B4XXD9
UniRef90_Q918V2        : --SYYTFVVTIPDKIEDY----GQAYYDVVDNEKWVYPEDREIIFKQA-QVYVDCLERRLKQMLVSGSMYN-----YFIQLEQGEKRWHIHVVLDISVGNPRN-------CREVIEKVEYEYNSICYGRPVRQTQINRTGSWKIETEDFIINYLLCKIPPEAKYAWTNINKIGDACLNIDLRKEI-------- : UniRef90_Q918V2
UniRef90_Q918V0        : MESYSRAVIRLP--WENIYEAIQEAAWPSLAALEPQRPGDLPYDWPLLDRRYVVACDA----FWQILQRRAAVFGRWYLQLEPSQAGRHLHLLLGAPGIRGRSWTAFLRNWARTTVHLNYAD-AIDIP--------RNT-HGRILDADFVFRYLAPKLPLEVTWAWTNEDQFKPFALCEPKRRELI------- : UniRef90_Q918V0
UniRef90_B4XXD0        : -----------PSVVLREVP---DEYPDWPVSDLRQYASHFDL--------AVNLGHILYRELLESFSMILPLQPKLFLQLEPSKSEFHYHLVCEQGQMSGREFSTWLKRWRTFMDRYMAGHH-----VWGLLWNIRKTRQGRLYDLSFVVRYLLPKLPVENCWAWSNIDRFQASLLSVPNRVRCLGE----- : UniRef90_B4XXD0
UniRef90_Q8QVL2        : -----------------------------MANRNMPAPE--DWPIEQICDKWVSVFELIDETLQVTYDNYFRERIYHFLQMEPSSAPFHLHLAVSPPRHKPREMGGWLKMFRQAMIEHR-PGTAP--PLYFEMRKTAHGRWWE-GDQDFIRCYLVPKLPPDVIWASTSMQEFDEVVLSEPKRR---------- : UniRef90_Q8QVL2
UniRef90_Q9E2G8        : ------------------------SNVLDCANDNWWC---SLLDLDTSDWEPLTHTNRLMAIYLSSVASKLDAGCLYFFQVECNEEGYHIHVVIGGPGLNPRNLGLFNNVLYHLVTENVKLKFLPGM--------TTKGKYFRD-GEQFIENYLMKKIPLNVVWCVTNIDGYIDTCISATFRR---------- : UniRef90_Q9E2G8
UniRef90_I4CMB0        : -ASCFTAVLHVPKSLCEEYPADNLSSVPDVIE-DWPV---TDLQSSEYFDIGVNLGRIIYRELLESFGMILHRSPKLIKQLEPSSSEIHYHLVAEQGNVSGTEISNWLKRWASFLTRHMAPGHS-----WCTLWDIRKTRQGRLYDLTFLLRYLLPKVPVEHVWAWTNMQRFEAAALSVPARVRCLSE----- : UniRef90_I4CMB0
UniRef90_Q9J0X5        : ---------------------VSANFINFV-NDNWWC---CFYQLEEDDWPRLQGWERLIAHLIVKVAGEFAVPGQYFLQAEHNDEGFHVHVVV----GGPFVTPRNVCNIVETGFNKVLRELEPTYEVSFKPAISKKGKYARD-GFDFVTNYLMPKLYPNVVYSVTNFSEYEYVCNSLAYRRNMHKKALTNT : UniRef90_Q9J0X5
UniRef90_Q6V7U3        : ---FYEVVFRLPRD---------NNNLLDEDRYQPELKEEDDW-----PEEYLTSEDALAYAVLSEIRRFFGKELQWFAQVECPTAGYHMHVLLNHPKLSNQTYGRKVNELACRIV-DTFGLINPEEVISTHYVKS-NYGHKKVRVESYLKNYFFRKTPPNYTWAFTNIVAWKPFVRNLIKRSEL-------- : UniRef90_Q6V7U3
UniRef90_H9A272        : --------------------------------DEWPIQELRESVP--IFDHAVNLGYCIFQQLFHAVTLPCRVKPSMFLQLEPSSGEVHYHLVVNQGDMVGREFSNWLRTWKVFMAGYV------VAPRWTLGWDIRKTRQGRLYDMSFVKNYLLPKLPLNCFYAWTNIDRFEAAVLSVRNRQ---------- : UniRef90_H9A272
UniRef90_A7J3Q4        : ------------------------------------------------------------------VTLPCRVKPSMFLQLEPSSGEMHYHLVVNQADMVGRECSNWLRTWKVFMAGYL------VAPVWTLSWNIRKTRQGRLYDMSFVKNYLLPKLPLNCYYAWTNIDRFEAAVLSVRNRQ---------- : UniRef90_A7J3Q4
UniRef90_H2ESE4        : --------VKGPTDWESPRSMVGERF-------DAPVGESDDWPTEDLEGLPVLLYTATIRSFYCIFAG--RAPPLVFLQLEPCTSEYHFHLVVGAEGLTGRDYSYWLRQLGRFMFQYVSW-------EWPYKWEVKKTRQGRLYDLGFVTQYLLPKVPLNCWWAWTNIPKFEAARLN--KRVRL-------- : UniRef90_H2ESE4
UniRef90_V5NE98        : ----------------------------------------GDWEPTHDNQATIMFAQHLFEFLVGGVVERCMGAYDVFAQLEHSSGYFHIHVCLLLGGMACAVFRRWFRTLCLLTEEPVERRLE-----WLSLSRNKHGRAER-GDKTFLWHYLLPKLSSKGQWAWSTTCWLSKYCVSDSEREALLA------ : UniRef90_V5NE98
UniRef90_H2ESE8        : -----------------------------VDSEGW--PPYTQWPSSPSAWRM-NQFNRLLQEVRFRLLAIGD--CSWFLQMEESPGGLHCHGWCASMMCSTRQLALALTSGFKQLGRSMYSGVRNGEDYYEFFRNKNRTIASRKGE--FVMAYLLPKLPSEVLWAATNVPEFSPYALSEPMRRTL-------- : UniRef90_H2ESE8
UniRef90_S5S2Z1        : ----------LPSMLDDMVDCLTDVNYDWEASLTMKLQNHHGLGQTLCESADMAV-KRLFQLKQQSVNPVFSC----FTQAEIGEASMHVHVVCGGDGLSGFIMAKYFWTTMFDLWRHYEGCFEPQYAISVQLLRTNESHAQRIDACSFITNYLLPKNRSLCTW----------------------------- : UniRef90_S5S2Z1
UniRef90_U3QY81        : ---------------------------------------------------------------------------KLFAQLEPGTGRCHVHIMLIQ-GLTSRGMSWMMKRLRTDITKYVTEALTGILGAWLSLKRCYNPKFGKSIPMSFLKYYFYQKTAPELVWAST-------------------------- : UniRef90_U3QY81
UniRef90_W8GWR1        : ---------------------LADVNYDWEASLAMKLQNHHSLG--------QTLCEAVKRLFQLKQQNVN---PCYFTQAEIGDDSMHVHVVCGGDGLSGFIIAKYFWNTMHELWRHYEGCFSPQYGISVQLRKVKAHHAQRIDASSYITNYLLPKNRMLATW----------------------------- : UniRef90_W8GWR1

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191 :
OrigSeq                : MATFYEVIVRVPFDVEEHLPGISDSFVDWVTGQIWELPPESDLNLTLVEQPQLTVADRIRRVFLYEWNKFSKQESKFFVQFEKGSEYFHLHTLVETSGISSMVLGRYVSQIRAQLVKVVFQGIEPQINDWVAITKVKKGGANKVVDSGYIPAYLLPKVQPELQWAWTNLDEYKLAALNLEERKRLVAQFLAES : OrigSeq

Jnet                   : ---EEEEEEEE--------------------------------------HHHHHHHHHHHHHHHHHHHHH------EEEEEE------EEEEEEE------HHHHHHHHHHHHHHHHHHH----------EEEEE------EEEE-----HHHH-------EEEEE-----HHHHHHHHHHHHHHHHHHH--- : Jnet
jhmm                   : ---EEEEEEE----------------------------------------HHHHHHHHHHHHHHHHHHHH------EEEEEE------EEEEEEE------HHHHHHHHHHHHHHHHHHH----------EEEEE-------EEE-----HHHH-------EEEEE-----HHHHHHHHHHHHHHHHHHH--- : jhmm
jpssm                  : ---EEEEEEEE--------------------------------------HHHHHHHHHHHHHHHHHHHHH------EEEEEE------EEEEEEE-------HHHHHHHHHHHHHHHHH-----------EEEEEE-----EEEE----HHHHH-------EEEEEE----HHHHHH-HHHHHHHHHHHHH-- : jpssm

Lupas 14               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------cccccccccccccc----------- : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---BBBBBB-BB--B---B--B---BB-BB----B-B-----B-B--B--BBB-BB-BBB-BBB--B--BB---B-BBBBBB----BBBBBBBBBB--B-BBBBB-BB--BB-BBB--BB--B-B-B--BB-BB-B----B--B--B-BBBBBB-----B-BBBBBBBB--B--BBBBB--B--BB--BB--- : Jnet_25
Jnet_5                 : ---BB-BBB-B----------B------------------------------B-BB--B---BB--B---------BBB-B-------BBBBBB------B--BB--B--B---B---B-----------B------------------B--BB-------B-BB------B--BB--------B-------- : Jnet_5
Jnet_0                 : ------B-B---------------------------------------------------------------------B----------BBBB--------------B---------------------------------------------B----------B---------------------------- : Jnet_0
Jnet Rel               : 9982789888136765445667666677777777777777777777663178999999999999999985278870567762578884588888437888713789999988999987525787777773477651688741750566003331377887347885257746787621689999999987389 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.