QUERY                  : GHVAGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFLALANA : QUERY 
UniRef90_Q0FA25        : -HKHGEMDVSSQEHAFDGFIRWSIRISCISIAILIFMAIFNS : UniRef90_Q0FA25
UniRef90_A3SQJ8        : -YKHGEMDITVQEKTFEQFIKWSMRVGIFSIGVLIFLAIFNG : UniRef90_A3SQJ8
UniRef90_U4V566        : -HKHGSMDTKVQEETFNGFISWTVKISLLSIGILVFMALVNS : UniRef90_U4V566
UniRef90_Q2CCE6        : -HKHGEMDITVQEQTFDAFIKFVTRGTILIIVSLVLLALVNG : UniRef90_Q2CCE6
UniRef90_UPI0003828B72 : -HKHGEMDIRAHQATFAGFIKAATWVCVLSIAVLVFMALSNA : UniRef90_UPI0003828B72
UniRef90_A0A017HSZ8    : -HELGTMDITRQQQTFVTFMRFVTRMCILVAVVLIFMALVNG : UniRef90_A0A017HSZ8
UniRef90_I7EIP0        : -HKHGSMDITVQEKTYNGFLKFTTRFCIAALLFAVFLAIF-- : UniRef90_I7EIP0

                       : 1---------11--------21--------31--------41 :
OrigSeq                : GHVAGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFLALANA : OrigSeq

Jnet                   : --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm                   : -----EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm                  : --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14               : ------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------ : Lupas 28

Jnet_25                : ----B-B-B--B--BB-BBB-B-BBBBB-BBBBBB-BBB--- : Jnet_25
Jnet_5                 : ------------------BB------B---B--B---B---- : Jnet_5
Jnet_0                 : -------------------B---------------------- : Jnet_0
Jnet Rel               : 998871121688999999999999999999999999987289 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.