SILENT_MODE
BLOCK_FILE jp_XnKPrfU.concise.blc
MAX_NSEQ 846
MAX_INPUT_LEN 848
OUTPUT_FILE jp_XnKPrfU.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 122 835   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 836 122 845 H SPACE
SUB_CHARS 1 836 122 845 E SPACE
SUB_CHARS 1 836 122 845 - SPACE
STRAND 65 839 70
COLOUR_TEXT_REGION 65 839 70 839 51
STRAND 73 839 75
COLOUR_TEXT_REGION 73 839 75 839 51
HELIX 3 839 12
COLOUR_TEXT_REGION 3 839 12 839 50
HELIX 20 839 20
COLOUR_TEXT_REGION 20 839 20 839 50
HELIX 40 839 52
COLOUR_TEXT_REGION 40 839 52 839 50
HELIX 81 839 98
COLOUR_TEXT_REGION 81 839 98 839 50
STRAND 65 844 69
COLOUR_TEXT_REGION 65 844 69 844 51
STRAND 73 844 75
COLOUR_TEXT_REGION 73 844 75 844 51
HELIX 2 844 12
COLOUR_TEXT_REGION 2 844 12 844 50
HELIX 20 844 21
COLOUR_TEXT_REGION 20 844 21 844 50
HELIX 39 844 53
COLOUR_TEXT_REGION 39 844 53 844 50
HELIX 81 844 98
COLOUR_TEXT_REGION 81 844 98 844 50
STRAND 20 845 21
COLOUR_TEXT_REGION 20 845 21 845 51
STRAND 26 845 28
COLOUR_TEXT_REGION 26 845 28 845 51
STRAND 64 845 70
COLOUR_TEXT_REGION 64 845 70 845 51
STRAND 72 845 75
COLOUR_TEXT_REGION 72 845 75 845 51
HELIX 3 845 11
COLOUR_TEXT_REGION 3 845 11 845 50
HELIX 81 845 98
COLOUR_TEXT_REGION 81 845 98 845 50