SILENT_MODE BLOCK_FILE jp_tZhLQPp.concise.blc MAX_NSEQ 676 MAX_INPUT_LEN 678 OUTPUT_FILE jp_tZhLQPp.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 194 665 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 666 194 675 H SPACE SUB_CHARS 1 666 194 675 E SPACE SUB_CHARS 1 666 194 675 - SPACE STRAND 6 669 13 COLOUR_TEXT_REGION 6 669 13 669 51 STRAND 44 669 49 COLOUR_TEXT_REGION 44 669 49 669 51 STRAND 54 669 57 COLOUR_TEXT_REGION 54 669 57 669 51 STRAND 108 669 114 COLOUR_TEXT_REGION 108 669 114 669 51 STRAND 138 669 145 COLOUR_TEXT_REGION 138 669 145 669 51 STRAND 168 669 172 COLOUR_TEXT_REGION 168 669 172 669 51 HELIX 22 669 36 COLOUR_TEXT_REGION 22 669 36 669 50 HELIX 66 669 75 COLOUR_TEXT_REGION 66 669 75 669 50 HELIX 85 669 95 COLOUR_TEXT_REGION 85 669 95 669 50 HELIX 125 669 133 COLOUR_TEXT_REGION 125 669 133 669 50 HELIX 154 669 160 COLOUR_TEXT_REGION 154 669 160 669 50 HELIX 177 669 191 COLOUR_TEXT_REGION 177 669 191 669 50 STRAND 5 674 13 COLOUR_TEXT_REGION 5 674 13 674 51 STRAND 43 674 49 COLOUR_TEXT_REGION 43 674 49 674 51 STRAND 54 674 58 COLOUR_TEXT_REGION 54 674 58 674 51 STRAND 108 674 114 COLOUR_TEXT_REGION 108 674 114 674 51 STRAND 137 674 146 COLOUR_TEXT_REGION 137 674 146 674 51 STRAND 168 674 172 COLOUR_TEXT_REGION 168 674 172 674 51 HELIX 22 674 36 COLOUR_TEXT_REGION 22 674 36 674 50 HELIX 65 674 74 COLOUR_TEXT_REGION 65 674 74 674 50 HELIX 85 674 96 COLOUR_TEXT_REGION 85 674 96 674 50 HELIX 123 674 133 COLOUR_TEXT_REGION 123 674 133 674 50 HELIX 154 674 160 COLOUR_TEXT_REGION 154 674 160 674 50 HELIX 177 674 191 COLOUR_TEXT_REGION 177 674 191 674 50 STRAND 6 675 13 COLOUR_TEXT_REGION 6 675 13 675 51 STRAND 45 675 49 COLOUR_TEXT_REGION 45 675 49 675 51 STRAND 54 675 55 COLOUR_TEXT_REGION 54 675 55 675 51 STRAND 74 675 76 COLOUR_TEXT_REGION 74 675 76 675 51 STRAND 108 675 115 COLOUR_TEXT_REGION 108 675 115 675 51 STRAND 139 675 143 COLOUR_TEXT_REGION 139 675 143 675 51 STRAND 168 675 172 COLOUR_TEXT_REGION 168 675 172 675 51 HELIX 20 675 37 COLOUR_TEXT_REGION 20 675 37 675 50 HELIX 71 675 73 COLOUR_TEXT_REGION 71 675 73 675 50 HELIX 77 675 77 COLOUR_TEXT_REGION 77 675 77 675 50 HELIX 87 675 92 COLOUR_TEXT_REGION 87 675 92 675 50 HELIX 125 675 134 COLOUR_TEXT_REGION 125 675 134 675 50 HELIX 154 675 160 COLOUR_TEXT_REGION 154 675 160 675 50 HELIX 176 675 190 COLOUR_TEXT_REGION 176 675 190 675 50