SILENT_MODE BLOCK_FILE jp_kCg2DVC.concise.blc MAX_NSEQ 747 MAX_INPUT_LEN 749 OUTPUT_FILE jp_kCg2DVC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 79 736 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 737 79 746 H SPACE SUB_CHARS 1 737 79 746 E SPACE SUB_CHARS 1 737 79 746 - SPACE STRAND 19 740 23 COLOUR_TEXT_REGION 19 740 23 740 51 STRAND 27 740 28 COLOUR_TEXT_REGION 27 740 28 740 51 HELIX 6 740 12 COLOUR_TEXT_REGION 6 740 12 740 50 HELIX 41 740 47 COLOUR_TEXT_REGION 41 740 47 740 50 HELIX 65 740 72 COLOUR_TEXT_REGION 65 740 72 740 50 STRAND 19 745 23 COLOUR_TEXT_REGION 19 745 23 745 51 STRAND 27 745 28 COLOUR_TEXT_REGION 27 745 28 745 51 HELIX 6 745 12 COLOUR_TEXT_REGION 6 745 12 745 50 HELIX 41 745 47 COLOUR_TEXT_REGION 41 745 47 745 50 HELIX 65 745 71 COLOUR_TEXT_REGION 65 745 71 745 50 STRAND 19 746 24 COLOUR_TEXT_REGION 19 746 24 746 51 STRAND 26 746 29 COLOUR_TEXT_REGION 26 746 29 746 51 HELIX 6 746 12 COLOUR_TEXT_REGION 6 746 12 746 50 HELIX 42 746 47 COLOUR_TEXT_REGION 42 746 47 746 50 HELIX 65 746 73 COLOUR_TEXT_REGION 65 746 73 746 50