SILENT_MODE
BLOCK_FILE jp_Efia5iJ.concise.blc
MAX_NSEQ 767
MAX_INPUT_LEN 769
OUTPUT_FILE jp_Efia5iJ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 756   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 757 97 766 H SPACE
SUB_CHARS 1 757 97 766 E SPACE
SUB_CHARS 1 757 97 766 - SPACE
STRAND 5 760 10
COLOUR_TEXT_REGION 5 760 10 760 51
STRAND 15 760 20
COLOUR_TEXT_REGION 15 760 20 760 51
STRAND 57 760 64
COLOUR_TEXT_REGION 57 760 64 760 51
HELIX 24 760 35
COLOUR_TEXT_REGION 24 760 35 760 50
HELIX 43 760 51
COLOUR_TEXT_REGION 43 760 51 760 50
HELIX 68 760 82
COLOUR_TEXT_REGION 68 760 82 760 50
STRAND 5 765 10
COLOUR_TEXT_REGION 5 765 10 765 51
STRAND 15 765 21
COLOUR_TEXT_REGION 15 765 21 765 51
STRAND 57 765 64
COLOUR_TEXT_REGION 57 765 64 765 51
HELIX 24 765 33
COLOUR_TEXT_REGION 24 765 33 765 50
HELIX 43 765 51
COLOUR_TEXT_REGION 43 765 51 765 50
HELIX 68 765 82
COLOUR_TEXT_REGION 68 765 82 765 50
STRAND 5 766 10
COLOUR_TEXT_REGION 5 766 10 766 51
STRAND 16 766 20
COLOUR_TEXT_REGION 16 766 20 766 51
STRAND 57 766 63
COLOUR_TEXT_REGION 57 766 63 766 51
HELIX 24 766 36
COLOUR_TEXT_REGION 24 766 36 766 50
HELIX 43 766 51
COLOUR_TEXT_REGION 43 766 51 766 50
HELIX 68 766 82
COLOUR_TEXT_REGION 68 766 82 766 50