SILENT_MODE BLOCK_FILE jp_R5d7hnU.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_R5d7hnU.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 371 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 371 15 H SPACE SUB_CHARS 1 6 371 15 E SPACE SUB_CHARS 1 6 371 15 - SPACE STRAND 60 9 61 COLOUR_TEXT_REGION 60 9 61 9 51 STRAND 92 9 100 COLOUR_TEXT_REGION 92 9 100 9 51 STRAND 114 9 128 COLOUR_TEXT_REGION 114 9 128 9 51 STRAND 133 9 136 COLOUR_TEXT_REGION 133 9 136 9 51 STRAND 140 9 146 COLOUR_TEXT_REGION 140 9 146 9 51 STRAND 170 9 175 COLOUR_TEXT_REGION 170 9 175 9 51 STRAND 235 9 238 COLOUR_TEXT_REGION 235 9 238 9 51 STRAND 252 9 258 COLOUR_TEXT_REGION 252 9 258 9 51 STRAND 268 9 272 COLOUR_TEXT_REGION 268 9 272 9 51 STRAND 289 9 289 COLOUR_TEXT_REGION 289 9 289 9 51 STRAND 305 9 313 COLOUR_TEXT_REGION 305 9 313 9 51 STRAND 318 9 321 COLOUR_TEXT_REGION 318 9 321 9 51 STRAND 327 9 332 COLOUR_TEXT_REGION 327 9 332 9 51 STRAND 338 9 344 COLOUR_TEXT_REGION 338 9 344 9 51 STRAND 351 9 359 COLOUR_TEXT_REGION 351 9 359 9 51 STRAND 363 9 367 COLOUR_TEXT_REGION 363 9 367 9 51 HELIX 34 9 46 COLOUR_TEXT_REGION 34 9 46 9 50 HELIX 68 9 68 COLOUR_TEXT_REGION 68 9 68 9 50 HELIX 70 9 77 COLOUR_TEXT_REGION 70 9 77 9 50 HELIX 156 9 165 COLOUR_TEXT_REGION 156 9 165 9 50 HELIX 279 9 288 COLOUR_TEXT_REGION 279 9 288 9 50 STRAND 34 14 34 COLOUR_TEXT_REGION 34 14 34 14 51 STRAND 60 14 62 COLOUR_TEXT_REGION 60 14 62 14 51 STRAND 66 14 68 COLOUR_TEXT_REGION 66 14 68 14 51 STRAND 92 14 99 COLOUR_TEXT_REGION 92 14 99 14 51 STRAND 115 14 129 COLOUR_TEXT_REGION 115 14 129 14 51 STRAND 133 14 136 COLOUR_TEXT_REGION 133 14 136 14 51 STRAND 140 14 146 COLOUR_TEXT_REGION 140 14 146 14 51 STRAND 170 14 175 COLOUR_TEXT_REGION 170 14 175 14 51 STRAND 235 14 238 COLOUR_TEXT_REGION 235 14 238 14 51 STRAND 253 14 258 COLOUR_TEXT_REGION 253 14 258 14 51 STRAND 268 14 271 COLOUR_TEXT_REGION 268 14 271 14 51 STRAND 289 14 289 COLOUR_TEXT_REGION 289 14 289 14 51 STRAND 306 14 313 COLOUR_TEXT_REGION 306 14 313 14 51 STRAND 318 14 322 COLOUR_TEXT_REGION 318 14 322 14 51 STRAND 328 14 332 COLOUR_TEXT_REGION 328 14 332 14 51 STRAND 338 14 344 COLOUR_TEXT_REGION 338 14 344 14 51 STRAND 351 14 359 COLOUR_TEXT_REGION 351 14 359 14 51 STRAND 363 14 367 COLOUR_TEXT_REGION 363 14 367 14 51 HELIX 35 14 45 COLOUR_TEXT_REGION 35 14 45 14 50 HELIX 70 14 70 COLOUR_TEXT_REGION 70 14 70 14 50 HELIX 72 14 77 COLOUR_TEXT_REGION 72 14 77 14 50 HELIX 112 14 114 COLOUR_TEXT_REGION 112 14 114 14 50 HELIX 156 14 165 COLOUR_TEXT_REGION 156 14 165 14 50 HELIX 279 14 288 COLOUR_TEXT_REGION 279 14 288 14 50 STRAND 21 15 23 COLOUR_TEXT_REGION 21 15 23 15 51 STRAND 92 15 100 COLOUR_TEXT_REGION 92 15 100 15 51 STRAND 113 15 119 COLOUR_TEXT_REGION 113 15 119 15 51 STRAND 125 15 128 COLOUR_TEXT_REGION 125 15 128 15 51 STRAND 133 15 136 COLOUR_TEXT_REGION 133 15 136 15 51 STRAND 140 15 146 COLOUR_TEXT_REGION 140 15 146 15 51 STRAND 152 15 153 COLOUR_TEXT_REGION 152 15 153 15 51 STRAND 170 15 175 COLOUR_TEXT_REGION 170 15 175 15 51 STRAND 219 15 219 COLOUR_TEXT_REGION 219 15 219 15 51 STRAND 235 15 237 COLOUR_TEXT_REGION 235 15 237 15 51 STRAND 252 15 258 COLOUR_TEXT_REGION 252 15 258 15 51 STRAND 271 15 272 COLOUR_TEXT_REGION 271 15 272 15 51 STRAND 288 15 289 COLOUR_TEXT_REGION 288 15 289 15 51 STRAND 305 15 312 COLOUR_TEXT_REGION 305 15 312 15 51 STRAND 317 15 319 COLOUR_TEXT_REGION 317 15 319 15 51 STRAND 326 15 332 COLOUR_TEXT_REGION 326 15 332 15 51 STRAND 337 15 344 COLOUR_TEXT_REGION 337 15 344 15 51 STRAND 351 15 358 COLOUR_TEXT_REGION 351 15 358 15 51 STRAND 362 15 367 COLOUR_TEXT_REGION 362 15 367 15 51 HELIX 34 15 47 COLOUR_TEXT_REGION 34 15 47 15 50 HELIX 68 15 77 COLOUR_TEXT_REGION 68 15 77 15 50 HELIX 120 15 124 COLOUR_TEXT_REGION 120 15 124 15 50 HELIX 157 15 165 COLOUR_TEXT_REGION 157 15 165 15 50 HELIX 200 15 206 COLOUR_TEXT_REGION 200 15 206 15 50 HELIX 212 15 212 COLOUR_TEXT_REGION 212 15 212 15 50 HELIX 266 15 270 COLOUR_TEXT_REGION 266 15 270 15 50 HELIX 281 15 287 COLOUR_TEXT_REGION 281 15 287 15 50