Jpred secondary structure prediction results

QUERY           : HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEELGQEIITGRLPFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYMTVWMIDIPKSYVDVGMLTRATFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFGGPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTSTSSEQCPIRLVEGQSQNVLQVRVAPTSMPNLVGVSLMLEGQQYRLEYFGDH : QUERY 
UniRef90_D0PP93 : -----------------------NCLLQDNFNATYCSDSFEKLDKRSHFTLPDTCNVKTTFLVNY-NRHKYGMFKFESRLPLPTMASATSGRVIKVLVLAEAGRPWK----RHWANLAMVTYSNVVRLTDLNAKFRTRFSRIWSVTLDRHEVDLD-LTFAGFLFAAPSVQLTLLMDYVPTFTWCGQI-SLKDPDLPVPSFQAIRPVCFPMWRYLNGQFHHQDGCHQESNWWNPTHIIPRLNPGTESHLNTCVCHVKYNLQELDAAHRIKILTISNFFGFYKPLYVLVTYFGSSDVNVEGPAPPLQYCVVFI--HRGNYGFFRTRQCPCHFSLGRDELVLVGHYV--DVKRIVGITIFFDGQEHRISYLG-- : UniRef90_D0PP93

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-------341-------351-------361------- :
OrigSeq         : HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEELGQEIITGRLPFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYMTVWMIDIPKSYVDVGMLTRATFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFGGPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTSTSSEQCPIRLVEGQSQNVLQVRVAPTSMPNLVGVSLMLEGQQYRLEYFGDH : OrigSeq

Jnet            : ---------------------------------HHHHHHHHHHHHH-------------EE------H-HHHHHHHH--------------EEEEEEEEE-------------EEEEEEEEEEEEEEE----EEEE---EEEEEEE---------HHHHHHHHHH----EEEEEE-----------------------------------------------------------EEEE-------------EEEEEEE---------EEEEE------HHHHHHHHHHE---------------EEEEEEEEE----EEEE-----EEEEEE-----EEEEEEE------EEEEEEEEE---EEEEE---- : Jnet
jhmm            : ---------------------------------EHHHHHHHHHHH--------------EEE---EEE-H-HHHHHH--------------EEEEEEEE------------HHHEEEEEEEEEEEEEEE---EEEE---EEEEEEE---------HHHHHHHHHH----EEEEEE-----------------------------------------------------------EEEE--------------EEEEEE---------EEEE-------HHHHHHHHHHE----------------EEEEEEEE----EEEEE-----EEEEE-----EEEEEEE------EEEEEEEEE---EEEEE---- : jhmm
jpssm           : --------------------EEE----------HHHHHHHHHHHHHH--------------------HHHHHHHHHH--------------EEEEEEEEE------------EEEEEEEHHHHHEEEE----EEEE---EEEEEEE-----EE---HHHHHHHHH----EEEEEE------------------------HHHHHHH-----H------E---------------EEE--------------EEEEEEE-------HHHHHEE--------HHHHHHHEE---------------EEEEEEEE----EEE------EEEEEEE----EEEEEEEE------EEEEEEEE---EEEEEE---- : jpssm

Lupas 14        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---------B-B--B-----B-B-BBB---B-B--BB-BB--B----BB-B--BB-B---BBB-BB-B--BB--BB---BBBBBBB-B----BBBBBBBB------------BBBBBBBBBBBBBBBBB--BB-B---BBBBBBB-B----BBB-BBBBBBBB--BB-B-BBBBB-BB-BBBBBB-B--B----B--BBB-B--BBB--BB-B----BB----B-----B--BBBBBB-B-B---B-BBBBBBBB-B-B--B-BB-BBBBBBBB-B-BBB-BBBBBBBBB---------B---BBBBBBBBB---B-BBBB----BBB-B--B---BBBBB-BBB--B--BBBBBBBB-B--BBB-BB--- : Jnet_25
Jnet_5          : -----------------------------------B---B--B-------B---B-B---B-B--------B---B---B----B-------BB-BBBB---------------B-B-B-----BB-B----B--------BB-B------B-B--B--B-BB-------B-BBB-------BB----------------------B----------------------------BB-------------B-B-B------------B-BB-B---------BBBBBB---------------B--BBB-B--------------B-B---------BB-B------B--BBBB-B--------B------ : Jnet_5
Jnet_0          : -----------------------------------------------------------------------------------------------BBB-B----------------B------------------------------------------------------------------B----------------------B-------------------------------------------B-B--------------B-----------------BB-------------------B----------------------------------------------B----------------- : Jnet_0
Jnet Rel        : 89888777644223334664201146777776417999999999822367876456545021776111012688775157777777765310367889813777777776510122332433342431088536622404568885478602356146775664158855898843777532123335677777776513222233234301146652314667777777764143006777667777631188886057776212112200688763125544321112677777777777610788898617752303216513189983588617888885378751256889861751788760799 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.