SILENT_MODE
BLOCK_FILE jp_YSK9Sbs.concise.blc
MAX_NSEQ 744
MAX_INPUT_LEN 746
OUTPUT_FILE jp_YSK9Sbs.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 81 733   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 734 81 743 H SPACE
SUB_CHARS 1 734 81 743 E SPACE
SUB_CHARS 1 734 81 743 - SPACE
STRAND 25 737 31
COLOUR_TEXT_REGION 25 737 31 737 51
STRAND 37 737 43
COLOUR_TEXT_REGION 37 737 43 737 51
STRAND 72 737 78
COLOUR_TEXT_REGION 72 737 78 737 51
HELIX 4 737 17
COLOUR_TEXT_REGION 4 737 17 737 50
HELIX 51 737 64
COLOUR_TEXT_REGION 51 737 64 737 50
STRAND 25 742 31
COLOUR_TEXT_REGION 25 742 31 742 51
STRAND 38 742 43
COLOUR_TEXT_REGION 38 742 43 742 51
STRAND 72 742 78
COLOUR_TEXT_REGION 72 742 78 742 51
HELIX 4 742 17
COLOUR_TEXT_REGION 4 742 17 742 50
HELIX 51 742 64
COLOUR_TEXT_REGION 51 742 64 742 50
STRAND 25 743 31
COLOUR_TEXT_REGION 25 743 31 743 51
STRAND 37 743 43
COLOUR_TEXT_REGION 37 743 43 743 51
STRAND 71 743 78
COLOUR_TEXT_REGION 71 743 78 743 51
HELIX 4 743 17
COLOUR_TEXT_REGION 4 743 17 743 50
HELIX 52 743 64
COLOUR_TEXT_REGION 52 743 64 743 50