SILENT_MODE BLOCK_FILE jp_LdGyCvs.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_LdGyCvs.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 162 11 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 12 162 21 H SPACE SUB_CHARS 1 12 162 21 E SPACE SUB_CHARS 1 12 162 21 - SPACE STRAND 159 15 160 COLOUR_TEXT_REGION 159 15 160 15 51 HELIX 8 15 35 COLOUR_TEXT_REGION 8 15 35 15 50 HELIX 45 15 66 COLOUR_TEXT_REGION 45 15 66 15 50 HELIX 71 15 77 COLOUR_TEXT_REGION 71 15 77 15 50 HELIX 82 15 97 COLOUR_TEXT_REGION 82 15 97 15 50 HELIX 102 15 114 COLOUR_TEXT_REGION 102 15 114 15 50 HELIX 129 15 139 COLOUR_TEXT_REGION 129 15 139 15 50 HELIX 149 15 155 COLOUR_TEXT_REGION 149 15 155 15 50 STRAND 159 20 161 COLOUR_TEXT_REGION 159 20 161 20 51 HELIX 8 20 35 COLOUR_TEXT_REGION 8 20 35 20 50 HELIX 47 20 47 COLOUR_TEXT_REGION 47 20 47 20 50 HELIX 51 20 66 COLOUR_TEXT_REGION 51 20 66 20 50 HELIX 71 20 76 COLOUR_TEXT_REGION 71 20 76 20 50 HELIX 81 20 97 COLOUR_TEXT_REGION 81 20 97 20 50 HELIX 102 20 114 COLOUR_TEXT_REGION 102 20 114 20 50 HELIX 129 20 140 COLOUR_TEXT_REGION 129 20 140 20 50 HELIX 149 20 154 COLOUR_TEXT_REGION 149 20 154 20 50 STRAND 124 21 125 COLOUR_TEXT_REGION 124 21 125 21 51 STRAND 159 21 160 COLOUR_TEXT_REGION 159 21 160 21 51 HELIX 9 21 36 COLOUR_TEXT_REGION 9 21 36 21 50 HELIX 44 21 66 COLOUR_TEXT_REGION 44 21 66 21 50 HELIX 71 21 77 COLOUR_TEXT_REGION 71 21 77 21 50 HELIX 83 21 96 COLOUR_TEXT_REGION 83 21 96 21 50 HELIX 101 21 114 COLOUR_TEXT_REGION 101 21 114 21 50 HELIX 128 21 138 COLOUR_TEXT_REGION 128 21 138 21 50 HELIX 149 21 155 COLOUR_TEXT_REGION 149 21 155 21 50