QUERY                  : LGIHSNDTRDAWVNKIAHVNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVH : QUERY 
UniRef90_G0A1L0        : -NIHDNPTRNAWMAKIATLDTMAKAHAFLTDFRARHMSPFKTDWSLELDGLWIELKIEEKLALLKHKEFNDSQLLNNCSCGADAQQVANAAIAKMEACEDMYEAERIHINFRLACKPPVMPVNVFLDTDRQLGTKLMELRNTDYYALPLEALREKRGAKVIR : UniRef90_G0A1L0
UniRef90_Q25BW0        : --IHDNPVRDEWVKKIGALSSLAKGVQFLKDFREQYTTPLRKSFDLELDWGWIELKIEQKLALLKHKEMNDAQILNKNADGTDAQQLANQVLASMDRCNDKWEAEKIHIQFRQQWKPPLMPVNVFQDTDRLLGNKLMELRNANYYDMPLEELRKARGVNVV- : UniRef90_Q25BW0
UniRef90_P27355        : --IHDNSIRTEWEAKIAKLTSVDQATKFIQDFRLAYTSPFRKSYDIDVDYQYIERKIEEKLSVLKTEKLPVADLITKATTGEDRAAVEATWIAKIKAAKSKYEADGIHIEFRQLYKPPVLPVNVFLRTDAALGTVLMEIRNTDYYGTPLEGLRKEPGVKVLH : UniRef90_P27355
UniRef90_UPI00036E058B : --IHDNPVRSEWQEKIGELKSVKDATAFIQDFRKKYTSPFRTSYALDVDYLFIEAKIEERLAVLKTSTYSATDLFSMATTGEAAQKVADTWIAKMDAEKDKFAAEKILITFRQLYKPPVLPVNVFFKVDTHLGSRLMELRNADYYADSLEELRKKRGVKVL- : UniRef90_UPI00036E058B
UniRef90_Q8KQE7        : ---YNTPVRDEWIEKITAIRTAREGTDMLARFRAEHTGPDRTTYDLKKEYNWIESRIEMRVSQLHAEATSDEDLLTKTIDGRCAKEVAAEWLKKAADIDCHYEMERLCVAFRKACKPPMMPINFFAPAEKELVAKLMKLRAPTYLTTSLDELREARGVTMI- : UniRef90_Q8KQE7
UniRef90_D2K2D2        : ----NTALRSDWAARAESLSDLDDAVATLMNYRSDRWG------SEDQDSLWIEARLEERVAVLRLQSMTDEEFRTRTLTGEDARHVCTDVAGRVAAAGDDYEIERINDEFRSKYKPPVMPANLFLPTERDLSEKLMKTRTVDWYGKSLGELREERGV-VVH : UniRef90_D2K2D2
UniRef90_Q5VJ87        : ---YHTPVRDEWLEKIAALRTVQEGIAMLQQFRKEHTGPDRLTYELKKEANWIESRIEMRVAQLHSEAIANAALLEKTIDGRDPVEITEEWLKKAEDIDCPIEMQRLCTAYRKAWKPPMMPINYFAPVEKKLVSKLLKLRAPNYLTTPVEELRK-------- : UniRef90_Q5VJ87

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------16 :
OrigSeq                : LGIHSNDTRDAWVNKIAHVNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVH : OrigSeq

Jnet                   : -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--------------HHHHHHHHHHH---------HHHHHHH---EE-- : Jnet
jhmm                   : -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--------------HHHHHHHHHHHH--------HHHHHH----EEE- : jhmm
jpssm                  : --------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHH---------EE--HHHHHHHHHHH----------HHHHHHH---EE-- : jpssm

Lupas 14               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25                : B-BB---BB--B--BB--B--B--BB-BB--BB--BBB-B---B-B---B-BB-B-B---BBBB-B--B--B-BB--BB---BB--BB--BB--B--B-B-B-B--BB--BB--B-BBBBBBBBBB-B---BB--BB-BBBB-BB---B--B-----B-BB- : Jnet_25
Jnet_5                 : -----------B---B--B-----B---B--B--------------------B--------------------B------------B---BB--B--------B--B---B-------BB-B--B----------B--B---------B--B-------B-- : Jnet_5
Jnet_0                 : ------------------------B------------------------------------------------------------------------------B-----------------B---------------------------------------- : Jnet_0
Jnet Rel               : 999887627899999998747999999999999860478876421361025899999999999986057545888712681118999999999986268608999999999862477887643332317889988874218887765278878704871318 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.