SILENT_MODE BLOCK_FILE jp_ysnJJ7f.concise.blc MAX_NSEQ 948 MAX_INPUT_LEN 950 OUTPUT_FILE jp_ysnJJ7f.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 386 937 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 938 386 947 H SPACE SUB_CHARS 1 938 386 947 E SPACE SUB_CHARS 1 938 386 947 - SPACE STRAND 10 941 14 COLOUR_TEXT_REGION 10 941 14 941 51 STRAND 50 941 52 COLOUR_TEXT_REGION 50 941 52 941 51 STRAND 86 941 88 COLOUR_TEXT_REGION 86 941 88 941 51 STRAND 132 941 137 COLOUR_TEXT_REGION 132 941 137 941 51 STRAND 176 941 180 COLOUR_TEXT_REGION 176 941 180 941 51 STRAND 211 941 216 COLOUR_TEXT_REGION 211 941 216 941 51 STRAND 240 941 245 COLOUR_TEXT_REGION 240 941 245 941 51 STRAND 282 941 288 COLOUR_TEXT_REGION 282 941 288 941 51 HELIX 7 941 7 COLOUR_TEXT_REGION 7 941 7 941 50 HELIX 9 941 9 COLOUR_TEXT_REGION 9 941 9 941 50 HELIX 35 941 45 COLOUR_TEXT_REGION 35 941 45 941 50 HELIX 67 941 80 COLOUR_TEXT_REGION 67 941 80 941 50 HELIX 108 941 127 COLOUR_TEXT_REGION 108 941 127 941 50 HELIX 150 941 170 COLOUR_TEXT_REGION 150 941 170 941 50 HELIX 195 941 205 COLOUR_TEXT_REGION 195 941 205 941 50 HELIX 221 941 221 COLOUR_TEXT_REGION 221 941 221 941 50 HELIX 227 941 235 COLOUR_TEXT_REGION 227 941 235 941 50 HELIX 267 941 276 COLOUR_TEXT_REGION 267 941 276 941 50 HELIX 295 941 341 COLOUR_TEXT_REGION 295 941 341 941 50 HELIX 345 941 357 COLOUR_TEXT_REGION 345 941 357 941 50 HELIX 361 941 366 COLOUR_TEXT_REGION 361 941 366 941 50 HELIX 370 941 383 COLOUR_TEXT_REGION 370 941 383 941 50 STRAND 10 946 14 COLOUR_TEXT_REGION 10 946 14 946 51 STRAND 50 946 52 COLOUR_TEXT_REGION 50 946 52 946 51 STRAND 85 946 88 COLOUR_TEXT_REGION 85 946 88 946 51 STRAND 132 946 137 COLOUR_TEXT_REGION 132 946 137 946 51 STRAND 175 946 180 COLOUR_TEXT_REGION 175 946 180 946 51 STRAND 211 946 216 COLOUR_TEXT_REGION 211 946 216 946 51 STRAND 240 946 245 COLOUR_TEXT_REGION 240 946 245 946 51 STRAND 282 946 287 COLOUR_TEXT_REGION 282 946 287 946 51 HELIX 35 946 45 COLOUR_TEXT_REGION 35 946 45 946 50 HELIX 68 946 80 COLOUR_TEXT_REGION 68 946 80 946 50 HELIX 108 946 127 COLOUR_TEXT_REGION 108 946 127 946 50 HELIX 150 946 170 COLOUR_TEXT_REGION 150 946 170 946 50 HELIX 195 946 205 COLOUR_TEXT_REGION 195 946 205 946 50 HELIX 220 946 222 COLOUR_TEXT_REGION 220 946 222 946 50 HELIX 227 946 235 COLOUR_TEXT_REGION 227 946 235 946 50 HELIX 267 946 276 COLOUR_TEXT_REGION 267 946 276 946 50 HELIX 295 946 341 COLOUR_TEXT_REGION 295 946 341 946 50 HELIX 346 946 357 COLOUR_TEXT_REGION 346 946 357 946 50 HELIX 361 946 365 COLOUR_TEXT_REGION 361 946 365 946 50 HELIX 371 946 384 COLOUR_TEXT_REGION 371 946 384 946 50 STRAND 13 947 17 COLOUR_TEXT_REGION 13 947 17 947 51 STRAND 50 947 51 COLOUR_TEXT_REGION 50 947 51 947 51 STRAND 56 947 56 COLOUR_TEXT_REGION 56 947 56 947 51 STRAND 132 947 137 COLOUR_TEXT_REGION 132 947 137 947 51 STRAND 177 947 179 COLOUR_TEXT_REGION 177 947 179 947 51 STRAND 210 947 215 COLOUR_TEXT_REGION 210 947 215 947 51 STRAND 240 947 245 COLOUR_TEXT_REGION 240 947 245 947 51 STRAND 283 947 288 COLOUR_TEXT_REGION 283 947 288 947 51 HELIX 6 947 12 COLOUR_TEXT_REGION 6 947 12 947 50 HELIX 35 947 44 COLOUR_TEXT_REGION 35 947 44 947 50 HELIX 65 947 80 COLOUR_TEXT_REGION 65 947 80 947 50 HELIX 108 947 128 COLOUR_TEXT_REGION 108 947 128 947 50 HELIX 150 947 171 COLOUR_TEXT_REGION 150 947 171 947 50 HELIX 194 947 204 COLOUR_TEXT_REGION 194 947 204 947 50 HELIX 227 947 236 COLOUR_TEXT_REGION 227 947 236 947 50 HELIX 267 947 276 COLOUR_TEXT_REGION 267 947 276 947 50 HELIX 295 947 334 COLOUR_TEXT_REGION 295 947 334 947 50 HELIX 341 947 357 COLOUR_TEXT_REGION 341 947 357 947 50 HELIX 361 947 366 COLOUR_TEXT_REGION 361 947 366 947 50 HELIX 369 947 383 COLOUR_TEXT_REGION 369 947 383 947 50