SILENT_MODE BLOCK_FILE jp_EdMQomm.concise.blc MAX_NSEQ 1019 MAX_INPUT_LEN 1021 OUTPUT_FILE jp_EdMQomm.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 136 1008 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1009 136 1018 H SPACE SUB_CHARS 1 1009 136 1018 E SPACE SUB_CHARS 1 1009 136 1018 - SPACE STRAND 15 1012 23 COLOUR_TEXT_REGION 15 1012 23 1012 51 STRAND 48 1012 52 COLOUR_TEXT_REGION 48 1012 52 1012 51 STRAND 79 1012 80 COLOUR_TEXT_REGION 79 1012 80 1012 51 STRAND 93 1012 97 COLOUR_TEXT_REGION 93 1012 97 1012 51 STRAND 116 1012 119 COLOUR_TEXT_REGION 116 1012 119 1012 51 STRAND 130 1012 132 COLOUR_TEXT_REGION 130 1012 132 1012 51 HELIX 0 1012 9 COLOUR_TEXT_REGION 0 1012 9 1012 50 HELIX 35 1012 44 COLOUR_TEXT_REGION 35 1012 44 1012 50 HELIX 59 1012 59 COLOUR_TEXT_REGION 59 1012 59 1012 50 HELIX 84 1012 89 COLOUR_TEXT_REGION 84 1012 89 1012 50 HELIX 102 1012 110 COLOUR_TEXT_REGION 102 1012 110 1012 50 HELIX 129 1012 129 COLOUR_TEXT_REGION 129 1012 129 1012 50 STRAND 15 1017 23 COLOUR_TEXT_REGION 15 1017 23 1017 51 STRAND 49 1017 52 COLOUR_TEXT_REGION 49 1017 52 1017 51 STRAND 79 1017 80 COLOUR_TEXT_REGION 79 1017 80 1017 51 STRAND 93 1017 97 COLOUR_TEXT_REGION 93 1017 97 1017 51 STRAND 116 1017 118 COLOUR_TEXT_REGION 116 1017 118 1017 51 STRAND 131 1017 131 COLOUR_TEXT_REGION 131 1017 131 1017 51 HELIX 0 1017 8 COLOUR_TEXT_REGION 0 1017 8 1017 50 HELIX 35 1017 44 COLOUR_TEXT_REGION 35 1017 44 1017 50 HELIX 58 1017 63 COLOUR_TEXT_REGION 58 1017 63 1017 50 HELIX 84 1017 89 COLOUR_TEXT_REGION 84 1017 89 1017 50 HELIX 102 1017 110 COLOUR_TEXT_REGION 102 1017 110 1017 50 HELIX 128 1017 130 COLOUR_TEXT_REGION 128 1017 130 1017 50 STRAND 15 1018 23 COLOUR_TEXT_REGION 15 1018 23 1018 51 STRAND 48 1018 53 COLOUR_TEXT_REGION 48 1018 53 1018 51 STRAND 79 1018 80 COLOUR_TEXT_REGION 79 1018 80 1018 51 STRAND 93 1018 97 COLOUR_TEXT_REGION 93 1018 97 1018 51 STRAND 115 1018 120 COLOUR_TEXT_REGION 115 1018 120 1018 51 STRAND 130 1018 133 COLOUR_TEXT_REGION 130 1018 133 1018 51 HELIX 2 1018 10 COLOUR_TEXT_REGION 2 1018 10 1018 50 HELIX 35 1018 44 COLOUR_TEXT_REGION 35 1018 44 1018 50 HELIX 84 1018 89 COLOUR_TEXT_REGION 84 1018 89 1018 50 HELIX 101 1018 110 COLOUR_TEXT_REGION 101 1018 110 1018 50