SILENT_MODE
BLOCK_FILE jp_IwQihS5.concise.blc
MAX_NSEQ 665
MAX_INPUT_LEN 667
OUTPUT_FILE jp_IwQihS5.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 44 654   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 655 44 664 H SPACE
SUB_CHARS 1 655 44 664 E SPACE
SUB_CHARS 1 655 44 664 - SPACE
STRAND 3 658 5
COLOUR_TEXT_REGION 3 658 5 658 51
STRAND 29 658 35
COLOUR_TEXT_REGION 29 658 35 658 51
STRAND 38 658 42
COLOUR_TEXT_REGION 38 658 42 658 51
HELIX 12 658 22
COLOUR_TEXT_REGION 12 658 22 658 50
STRAND 3 663 5
COLOUR_TEXT_REGION 3 663 5 663 51
STRAND 12 663 13
COLOUR_TEXT_REGION 12 663 13 663 51
STRAND 29 663 35
COLOUR_TEXT_REGION 29 663 35 663 51
STRAND 38 663 42
COLOUR_TEXT_REGION 38 663 42 663 51
HELIX 16 663 21
COLOUR_TEXT_REGION 16 663 21 663 50
STRAND 29 664 35
COLOUR_TEXT_REGION 29 664 35 664 51
STRAND 38 664 42
COLOUR_TEXT_REGION 38 664 42 664 51
HELIX 3 664 6
COLOUR_TEXT_REGION 3 664 6 664 50
HELIX 12 664 22
COLOUR_TEXT_REGION 12 664 22 664 50