SILENT_MODE BLOCK_FILE jp_MSrlyqK.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_MSrlyqK.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 162 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 162 15 H SPACE SUB_CHARS 1 6 162 15 E SPACE SUB_CHARS 1 6 162 15 - SPACE STRAND 122 9 124 COLOUR_TEXT_REGION 122 9 124 9 51 STRAND 134 9 137 COLOUR_TEXT_REGION 134 9 137 9 51 STRAND 144 9 151 COLOUR_TEXT_REGION 144 9 151 9 51 STRAND 156 9 156 COLOUR_TEXT_REGION 156 9 156 9 51 HELIX 3 9 10 COLOUR_TEXT_REGION 3 9 10 9 50 HELIX 13 9 35 COLOUR_TEXT_REGION 13 9 35 9 50 HELIX 49 9 59 COLOUR_TEXT_REGION 49 9 59 9 50 HELIX 72 9 79 COLOUR_TEXT_REGION 72 9 79 9 50 HELIX 84 9 96 COLOUR_TEXT_REGION 84 9 96 9 50 HELIX 99 9 104 COLOUR_TEXT_REGION 99 9 104 9 50 HELIX 129 9 133 COLOUR_TEXT_REGION 129 9 133 9 50 HELIX 152 9 155 COLOUR_TEXT_REGION 152 9 155 9 50 STRAND 122 14 124 COLOUR_TEXT_REGION 122 14 124 14 51 STRAND 136 14 137 COLOUR_TEXT_REGION 136 14 137 14 51 STRAND 144 14 149 COLOUR_TEXT_REGION 144 14 149 14 51 HELIX 2 14 10 COLOUR_TEXT_REGION 2 14 10 14 50 HELIX 13 14 34 COLOUR_TEXT_REGION 13 14 34 14 50 HELIX 49 14 59 COLOUR_TEXT_REGION 49 14 59 14 50 HELIX 72 14 79 COLOUR_TEXT_REGION 72 14 79 14 50 HELIX 85 14 96 COLOUR_TEXT_REGION 85 14 96 14 50 HELIX 98 14 104 COLOUR_TEXT_REGION 98 14 104 14 50 HELIX 128 14 135 COLOUR_TEXT_REGION 128 14 135 14 50 HELIX 150 14 156 COLOUR_TEXT_REGION 150 14 156 14 50 STRAND 99 15 104 COLOUR_TEXT_REGION 99 15 104 15 51 STRAND 121 15 124 COLOUR_TEXT_REGION 121 15 124 15 51 STRAND 131 15 138 COLOUR_TEXT_REGION 131 15 138 15 51 STRAND 144 15 148 COLOUR_TEXT_REGION 144 15 148 15 51 STRAND 150 15 157 COLOUR_TEXT_REGION 150 15 157 15 51 HELIX 3 15 36 COLOUR_TEXT_REGION 3 15 36 15 50 HELIX 49 15 59 COLOUR_TEXT_REGION 49 15 59 15 50 HELIX 72 15 79 COLOUR_TEXT_REGION 72 15 79 15 50 HELIX 84 15 96 COLOUR_TEXT_REGION 84 15 96 15 50 HELIX 130 15 130 COLOUR_TEXT_REGION 130 15 130 15 50