SILENT_MODE
BLOCK_FILE jp_xPk1uVp.concise.blc
MAX_NSEQ 86
MAX_INPUT_LEN 88
OUTPUT_FILE jp_xPk1uVp.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 96 75   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 76 96 85 H SPACE
SUB_CHARS 1 76 96 85 E SPACE
SUB_CHARS 1 76 96 85 - SPACE
STRAND 6 79 10
COLOUR_TEXT_REGION 6 79 10 79 51
STRAND 18 79 19
COLOUR_TEXT_REGION 18 79 19 79 51
STRAND 24 79 27
COLOUR_TEXT_REGION 24 79 27 79 51
STRAND 55 79 60
COLOUR_TEXT_REGION 55 79 60 79 51
STRAND 65 79 66
COLOUR_TEXT_REGION 65 79 66 79 51
STRAND 83 79 90
COLOUR_TEXT_REGION 83 79 90 79 51
HELIX 39 79 49
COLOUR_TEXT_REGION 39 79 49 79 50
STRAND 6 84 10
COLOUR_TEXT_REGION 6 84 10 84 51
STRAND 17 84 19
COLOUR_TEXT_REGION 17 84 19 84 51
STRAND 25 84 26
COLOUR_TEXT_REGION 25 84 26 84 51
STRAND 55 84 60
COLOUR_TEXT_REGION 55 84 60 84 51
STRAND 84 84 90
COLOUR_TEXT_REGION 84 84 90 84 51
HELIX 39 84 49
COLOUR_TEXT_REGION 39 84 49 84 50
STRAND 24 85 27
COLOUR_TEXT_REGION 24 85 27 85 51
STRAND 55 85 60
COLOUR_TEXT_REGION 55 85 60 85 51
STRAND 64 85 67
COLOUR_TEXT_REGION 64 85 67 85 51
STRAND 83 85 90
COLOUR_TEXT_REGION 83 85 90 85 51
HELIX 5 85 12
COLOUR_TEXT_REGION 5 85 12 85 50
HELIX 14 85 14
COLOUR_TEXT_REGION 14 85 14 85 50
HELIX 39 85 48
COLOUR_TEXT_REGION 39 85 48 85 50