SILENT_MODE BLOCK_FILE jp_HIAwS_R.concise.blc MAX_NSEQ 1130 MAX_INPUT_LEN 1132 OUTPUT_FILE jp_HIAwS_R.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 99 1119 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1120 99 1129 H SPACE SUB_CHARS 1 1120 99 1129 E SPACE SUB_CHARS 1 1120 99 1129 - SPACE STRAND 3 1123 9 COLOUR_TEXT_REGION 3 1123 9 1123 51 STRAND 37 1123 41 COLOUR_TEXT_REGION 37 1123 41 1123 51 STRAND 59 1123 65 COLOUR_TEXT_REGION 59 1123 65 1123 51 STRAND 87 1123 95 COLOUR_TEXT_REGION 87 1123 95 1123 51 HELIX 15 1123 33 COLOUR_TEXT_REGION 15 1123 33 1123 50 HELIX 69 1123 77 COLOUR_TEXT_REGION 69 1123 77 1123 50 HELIX 82 1123 82 COLOUR_TEXT_REGION 82 1123 82 1123 50 STRAND 3 1128 9 COLOUR_TEXT_REGION 3 1128 9 1128 51 STRAND 37 1128 41 COLOUR_TEXT_REGION 37 1128 41 1128 51 STRAND 59 1128 65 COLOUR_TEXT_REGION 59 1128 65 1128 51 STRAND 86 1128 95 COLOUR_TEXT_REGION 86 1128 95 1128 51 HELIX 15 1128 34 COLOUR_TEXT_REGION 15 1128 34 1128 50 HELIX 69 1128 77 COLOUR_TEXT_REGION 69 1128 77 1128 50 STRAND 3 1129 9 COLOUR_TEXT_REGION 3 1129 9 1129 51 STRAND 38 1129 41 COLOUR_TEXT_REGION 38 1129 41 1129 51 STRAND 58 1129 65 COLOUR_TEXT_REGION 58 1129 65 1129 51 STRAND 87 1129 94 COLOUR_TEXT_REGION 87 1129 94 1129 51 HELIX 15 1129 33 COLOUR_TEXT_REGION 15 1129 33 1129 50 HELIX 69 1129 77 COLOUR_TEXT_REGION 69 1129 77 1129 50 HELIX 81 1129 83 COLOUR_TEXT_REGION 81 1129 83 1129 50