SILENT_MODE
BLOCK_FILE jp_3Rf9T21.concise.blc
MAX_NSEQ 156
MAX_INPUT_LEN 158
OUTPUT_FILE jp_3Rf9T21.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 132 145   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 146 132 155 H SPACE
SUB_CHARS 1 146 132 155 E SPACE
SUB_CHARS 1 146 132 155 - SPACE
STRAND 6 149 11
COLOUR_TEXT_REGION 6 149 11 149 51
STRAND 26 149 31
COLOUR_TEXT_REGION 26 149 31 149 51
STRAND 40 149 44
COLOUR_TEXT_REGION 40 149 44 149 51
STRAND 55 149 62
COLOUR_TEXT_REGION 55 149 62 149 51
STRAND 68 149 73
COLOUR_TEXT_REGION 68 149 73 149 51
STRAND 78 149 83
COLOUR_TEXT_REGION 78 149 83 149 51
HELIX 89 149 105
COLOUR_TEXT_REGION 89 149 105 149 50
STRAND 6 154 11
COLOUR_TEXT_REGION 6 154 11 154 51
STRAND 26 154 31
COLOUR_TEXT_REGION 26 154 31 154 51
STRAND 40 154 44
COLOUR_TEXT_REGION 40 154 44 154 51
STRAND 56 154 62
COLOUR_TEXT_REGION 56 154 62 154 51
STRAND 68 154 73
COLOUR_TEXT_REGION 68 154 73 154 51
STRAND 78 154 82
COLOUR_TEXT_REGION 78 154 82 154 51
HELIX 54 154 55
COLOUR_TEXT_REGION 54 154 55 154 50
HELIX 89 154 105
COLOUR_TEXT_REGION 89 154 105 154 50
STRAND 6 155 11
COLOUR_TEXT_REGION 6 155 11 155 51
STRAND 26 155 31
COLOUR_TEXT_REGION 26 155 31 155 51
STRAND 40 155 45
COLOUR_TEXT_REGION 40 155 45 155 51
STRAND 54 155 63
COLOUR_TEXT_REGION 54 155 63 155 51
STRAND 68 155 73
COLOUR_TEXT_REGION 68 155 73 155 51
STRAND 78 155 83
COLOUR_TEXT_REGION 78 155 83 155 51
HELIX 89 155 105
COLOUR_TEXT_REGION 89 155 105 155 50