SILENT_MODE
BLOCK_FILE jp_tqE05X3.concise.blc
MAX_NSEQ 703
MAX_INPUT_LEN 705
OUTPUT_FILE jp_tqE05X3.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 195 692   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 693 195 702 H SPACE
SUB_CHARS 1 693 195 702 E SPACE
SUB_CHARS 1 693 195 702 - SPACE
HELIX 3 696 12
COLOUR_TEXT_REGION 3 696 12 696 50
HELIX 16 696 29
COLOUR_TEXT_REGION 16 696 29 696 50
HELIX 35 696 52
COLOUR_TEXT_REGION 35 696 52 696 50
HELIX 62 696 73
COLOUR_TEXT_REGION 62 696 73 696 50
HELIX 96 696 102
COLOUR_TEXT_REGION 96 696 102 696 50
HELIX 119 696 126
COLOUR_TEXT_REGION 119 696 126 696 50
HELIX 130 696 143
COLOUR_TEXT_REGION 130 696 143 696 50
HELIX 150 696 167
COLOUR_TEXT_REGION 150 696 167 696 50
HELIX 173 696 193
COLOUR_TEXT_REGION 173 696 193 696 50
HELIX 3 701 12
COLOUR_TEXT_REGION 3 701 12 701 50
HELIX 16 701 29
COLOUR_TEXT_REGION 16 701 29 701 50
HELIX 35 701 52
COLOUR_TEXT_REGION 35 701 52 701 50
HELIX 61 701 73
COLOUR_TEXT_REGION 61 701 73 701 50
HELIX 120 701 123
COLOUR_TEXT_REGION 120 701 123 701 50
HELIX 128 701 144
COLOUR_TEXT_REGION 128 701 144 701 50
HELIX 150 701 168
COLOUR_TEXT_REGION 150 701 168 701 50
HELIX 173 701 193
COLOUR_TEXT_REGION 173 701 193 701 50
HELIX 3 702 12
COLOUR_TEXT_REGION 3 702 12 702 50
HELIX 17 702 29
COLOUR_TEXT_REGION 17 702 29 702 50
HELIX 35 702 52
COLOUR_TEXT_REGION 35 702 52 702 50
HELIX 65 702 73
COLOUR_TEXT_REGION 65 702 73 702 50
HELIX 94 702 102
COLOUR_TEXT_REGION 94 702 102 702 50
HELIX 119 702 127
COLOUR_TEXT_REGION 119 702 127 702 50
HELIX 131 702 143
COLOUR_TEXT_REGION 131 702 143 702 50
HELIX 150 702 167
COLOUR_TEXT_REGION 150 702 167 702 50
HELIX 173 702 193
COLOUR_TEXT_REGION 173 702 193 702 50