SILENT_MODE BLOCK_FILE jp_wjaxbV4.concise.blc MAX_NSEQ 986 MAX_INPUT_LEN 988 OUTPUT_FILE jp_wjaxbV4.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 109 975 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 976 109 985 H SPACE SUB_CHARS 1 976 109 985 E SPACE SUB_CHARS 1 976 109 985 - SPACE STRAND 4 979 9 COLOUR_TEXT_REGION 4 979 9 979 51 STRAND 18 979 27 COLOUR_TEXT_REGION 18 979 27 979 51 STRAND 32 979 40 COLOUR_TEXT_REGION 32 979 40 979 51 HELIX 17 979 17 COLOUR_TEXT_REGION 17 979 17 979 50 HELIX 47 979 57 COLOUR_TEXT_REGION 47 979 57 979 50 HELIX 63 979 76 COLOUR_TEXT_REGION 63 979 76 979 50 HELIX 87 979 107 COLOUR_TEXT_REGION 87 979 107 979 50 STRAND 3 984 9 COLOUR_TEXT_REGION 3 984 9 984 51 STRAND 19 984 27 COLOUR_TEXT_REGION 19 984 27 984 51 STRAND 32 984 40 COLOUR_TEXT_REGION 32 984 40 984 51 HELIX 16 984 18 COLOUR_TEXT_REGION 16 984 18 984 50 HELIX 47 984 57 COLOUR_TEXT_REGION 47 984 57 984 50 HELIX 63 984 76 COLOUR_TEXT_REGION 63 984 76 984 50 HELIX 87 984 107 COLOUR_TEXT_REGION 87 984 107 984 50 STRAND 5 985 10 COLOUR_TEXT_REGION 5 985 10 985 51 STRAND 18 985 27 COLOUR_TEXT_REGION 18 985 27 985 51 STRAND 31 985 40 COLOUR_TEXT_REGION 31 985 40 985 51 STRAND 47 985 48 COLOUR_TEXT_REGION 47 985 48 985 51 HELIX 49 985 56 COLOUR_TEXT_REGION 49 985 56 985 50 HELIX 63 985 77 COLOUR_TEXT_REGION 63 985 77 985 50 HELIX 87 985 107 COLOUR_TEXT_REGION 87 985 107 985 50