SILENT_MODE BLOCK_FILE jp_mc_NMUc.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_mc_NMUc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 328 32 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 33 328 42 H SPACE SUB_CHARS 1 33 328 42 E SPACE SUB_CHARS 1 33 328 42 - SPACE STRAND 29 36 36 COLOUR_TEXT_REGION 29 36 36 36 51 STRAND 81 36 85 COLOUR_TEXT_REGION 81 36 85 36 51 STRAND 105 36 107 COLOUR_TEXT_REGION 105 36 107 36 51 STRAND 122 36 129 COLOUR_TEXT_REGION 122 36 129 36 51 STRAND 135 36 140 COLOUR_TEXT_REGION 135 36 140 36 51 STRAND 173 36 175 COLOUR_TEXT_REGION 173 36 175 36 51 STRAND 180 36 187 COLOUR_TEXT_REGION 180 36 187 36 51 STRAND 201 36 205 COLOUR_TEXT_REGION 201 36 205 36 51 STRAND 223 36 226 COLOUR_TEXT_REGION 223 36 226 36 51 STRAND 232 36 242 COLOUR_TEXT_REGION 232 36 242 36 51 STRAND 264 36 269 COLOUR_TEXT_REGION 264 36 269 36 51 STRAND 285 36 286 COLOUR_TEXT_REGION 285 36 286 36 51 STRAND 302 36 306 COLOUR_TEXT_REGION 302 36 306 36 51 STRAND 322 36 326 COLOUR_TEXT_REGION 322 36 326 36 51 HELIX 3 36 5 COLOUR_TEXT_REGION 3 36 5 36 50 HELIX 9 36 21 COLOUR_TEXT_REGION 9 36 21 36 50 HELIX 60 36 72 COLOUR_TEXT_REGION 60 36 72 36 50 HELIX 193 36 196 COLOUR_TEXT_REGION 193 36 196 36 50 HELIX 212 36 212 COLOUR_TEXT_REGION 212 36 212 36 50 HELIX 243 36 247 COLOUR_TEXT_REGION 243 36 247 36 50 HELIX 272 36 275 COLOUR_TEXT_REGION 272 36 275 36 50 HELIX 312 36 314 COLOUR_TEXT_REGION 312 36 314 36 50 HELIX 320 36 321 COLOUR_TEXT_REGION 320 36 321 36 50 STRAND 29 41 36 COLOUR_TEXT_REGION 29 41 36 41 51 STRAND 73 41 73 COLOUR_TEXT_REGION 73 41 73 41 51 STRAND 81 41 87 COLOUR_TEXT_REGION 81 41 87 41 51 STRAND 105 41 107 COLOUR_TEXT_REGION 105 41 107 41 51 STRAND 123 41 129 COLOUR_TEXT_REGION 123 41 129 41 51 STRAND 135 41 140 COLOUR_TEXT_REGION 135 41 140 41 51 STRAND 161 41 162 COLOUR_TEXT_REGION 161 41 162 41 51 STRAND 173 41 175 COLOUR_TEXT_REGION 173 41 175 41 51 STRAND 180 41 187 COLOUR_TEXT_REGION 180 41 187 41 51 STRAND 201 41 204 COLOUR_TEXT_REGION 201 41 204 41 51 STRAND 223 41 226 COLOUR_TEXT_REGION 223 41 226 41 51 STRAND 231 41 243 COLOUR_TEXT_REGION 231 41 243 41 51 STRAND 264 41 269 COLOUR_TEXT_REGION 264 41 269 41 51 STRAND 302 41 306 COLOUR_TEXT_REGION 302 41 306 41 51 STRAND 323 41 325 COLOUR_TEXT_REGION 323 41 325 41 51 HELIX 3 41 6 COLOUR_TEXT_REGION 3 41 6 41 50 HELIX 9 41 21 COLOUR_TEXT_REGION 9 41 21 41 50 HELIX 60 41 72 COLOUR_TEXT_REGION 60 41 72 41 50 HELIX 193 41 196 COLOUR_TEXT_REGION 193 41 196 41 50 HELIX 212 41 212 COLOUR_TEXT_REGION 212 41 212 41 50 HELIX 214 41 215 COLOUR_TEXT_REGION 214 41 215 41 50 HELIX 244 41 247 COLOUR_TEXT_REGION 244 41 247 41 50 HELIX 253 41 255 COLOUR_TEXT_REGION 253 41 255 41 50 HELIX 272 41 275 COLOUR_TEXT_REGION 272 41 275 41 50 HELIX 312 41 322 COLOUR_TEXT_REGION 312 41 322 41 50 STRAND 29 42 36 COLOUR_TEXT_REGION 29 42 36 42 51 STRAND 83 42 85 COLOUR_TEXT_REGION 83 42 85 42 51 STRAND 105 42 108 COLOUR_TEXT_REGION 105 42 108 42 51 STRAND 122 42 129 COLOUR_TEXT_REGION 122 42 129 42 51 STRAND 136 42 140 COLOUR_TEXT_REGION 136 42 140 42 51 STRAND 180 42 187 COLOUR_TEXT_REGION 180 42 187 42 51 STRAND 202 42 205 COLOUR_TEXT_REGION 202 42 205 42 51 STRAND 225 42 226 COLOUR_TEXT_REGION 225 42 226 42 51 STRAND 232 42 242 COLOUR_TEXT_REGION 232 42 242 42 51 STRAND 264 42 268 COLOUR_TEXT_REGION 264 42 268 42 51 STRAND 285 42 288 COLOUR_TEXT_REGION 285 42 288 42 51 STRAND 303 42 306 COLOUR_TEXT_REGION 303 42 306 42 51 STRAND 312 42 314 COLOUR_TEXT_REGION 312 42 314 42 51 STRAND 321 42 326 COLOUR_TEXT_REGION 321 42 326 42 51 HELIX 9 42 21 COLOUR_TEXT_REGION 9 42 21 42 50 HELIX 59 42 73 COLOUR_TEXT_REGION 59 42 73 42 50 HELIX 192 42 196 COLOUR_TEXT_REGION 192 42 196 42 50 HELIX 243 42 247 COLOUR_TEXT_REGION 243 42 247 42 50 HELIX 269 42 270 COLOUR_TEXT_REGION 269 42 270 42 50 HELIX 272 42 275 COLOUR_TEXT_REGION 272 42 275 42 50