SILENT_MODE BLOCK_FILE jp_VW8ArUW.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_VW8ArUW.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 186 7 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 8 186 17 H SPACE SUB_CHARS 1 8 186 17 E SPACE SUB_CHARS 1 8 186 17 - SPACE STRAND 117 11 120 COLOUR_TEXT_REGION 117 11 120 11 51 HELIX 13 11 22 COLOUR_TEXT_REGION 13 11 22 11 50 HELIX 24 11 35 COLOUR_TEXT_REGION 24 11 35 11 50 HELIX 40 11 64 COLOUR_TEXT_REGION 40 11 64 11 50 HELIX 71 11 87 COLOUR_TEXT_REGION 71 11 87 11 50 HELIX 93 11 116 COLOUR_TEXT_REGION 93 11 116 11 50 HELIX 126 11 134 COLOUR_TEXT_REGION 126 11 134 11 50 HELIX 136 11 148 COLOUR_TEXT_REGION 136 11 148 11 50 HELIX 159 11 179 COLOUR_TEXT_REGION 159 11 179 11 50 STRAND 117 16 120 COLOUR_TEXT_REGION 117 16 120 16 51 HELIX 6 16 7 COLOUR_TEXT_REGION 6 16 7 16 50 HELIX 10 16 22 COLOUR_TEXT_REGION 10 16 22 16 50 HELIX 24 16 35 COLOUR_TEXT_REGION 24 16 35 16 50 HELIX 40 16 48 COLOUR_TEXT_REGION 40 16 48 16 50 HELIX 50 16 64 COLOUR_TEXT_REGION 50 16 64 16 50 HELIX 71 16 87 COLOUR_TEXT_REGION 71 16 87 16 50 HELIX 92 16 116 COLOUR_TEXT_REGION 92 16 116 16 50 HELIX 127 16 134 COLOUR_TEXT_REGION 127 16 134 16 50 HELIX 137 16 148 COLOUR_TEXT_REGION 137 16 148 16 50 HELIX 159 16 174 COLOUR_TEXT_REGION 159 16 174 16 50 HELIX 177 16 177 COLOUR_TEXT_REGION 177 16 177 16 50 STRAND 19 17 22 COLOUR_TEXT_REGION 19 17 22 17 51 STRAND 118 17 119 COLOUR_TEXT_REGION 118 17 119 17 51 HELIX 14 17 18 COLOUR_TEXT_REGION 14 17 18 17 50 HELIX 24 17 34 COLOUR_TEXT_REGION 24 17 34 17 50 HELIX 40 17 65 COLOUR_TEXT_REGION 40 17 65 17 50 HELIX 71 17 88 COLOUR_TEXT_REGION 71 17 88 17 50 HELIX 96 17 117 COLOUR_TEXT_REGION 96 17 117 17 50 HELIX 125 17 133 COLOUR_TEXT_REGION 125 17 133 17 50 HELIX 136 17 147 COLOUR_TEXT_REGION 136 17 147 17 50 HELIX 161 17 179 COLOUR_TEXT_REGION 161 17 179 17 50