QUERY           : YHYEHETHAPLSPRIRKVGDIEFHACSDYIYLLMTLSKDPEKFNYALKDRVSIRRYVRKNQNRYNYFLIEERVQDNIVNRISDRLISYCTDKEVTEDYIKKIDDYLWVEQRVIEEVSINVDHAREVKEKKRIMNDKKLIRMLFDTYEYVKDVKFTDDQYKDAAARISQFLIDVVDSYIIKPIPALP : QUERY 
UniRef90_B3L0X7 : ----HEMQSPLDSTIFLILSTEFDTTETYLNKIMNCSTDEEK-NELLDDHIGILKEMYENCKKNENFRLPFEIRDSMALRISDRLRDFCFSDYVTESNMVALKSIFSIELEVFEGIFYYIEHKNTYREKKEVINDLELIKFYHEELITNNGLYLTDEQFDNAAMRVSNFVNDL------------- : UniRef90_B3L0X7
UniRef90_W7A102 : -----ELEDLLDRSLYSILFVEFETTKTYLNKIINCATDEQK-NELLEDHIGILQEMYENYKKSDNSGLPSELRDSMALRISDRLRDFCFTESITDSYMETLKSIFALELEVFKGLFCYVKDKSTYNEKKTVINDLELIRFYHEELLTENGLYLTDEQLDNAAMRVSNFVNDM------------- : UniRef90_W7A102
UniRef90_W7KD95 : --------------INNICELEFNSTNNYLMKIIN--NDKLKHN-SLNDNEAILKEITKTQNELFSLKLPLEIKVSMALRISERLRAFVFDKDLTAYYIKKLKDIFKLETEAAKNYYYYVKCQKTFSDKKRLVNNLDSIKLYYESQINKNFISIPKDKIPTAIYRISNLVNDLI------------ : UniRef90_W7KD95

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181--- :
OrigSeq         : YHYEHETHAPLSPRIRKVGDIEFHACSDYIYLLMTLSKDPEKFNYALKDRVSIRRYVRKNQNRYNYFLIEERVQDNIVNRISDRLISYCTDKEVTEDYIKKIDDYLWVEQRVIEEVSINVDHAREVKEKKRIMNDKKLIRMLFDTYEYVKDVKFTDDQYKDAAARISQFLIDVVDSYIIKPIPALP : OrigSeq

Jnet            : ------------HHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHEEEE-----HHHHHHHHH-HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH------- : Jnet
jhmm            : -----HH--HHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHEEEE------HHHHHHHH--HHHHHHHHHHHH----------HHHHHHHHHHHHHHHH--H--------- : jhmm
jpssm           : -------------HHHHHEEEE-HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHEE-----HHHHHHHHH--HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH------- : jpssm

Lupas 14        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25         : --B---B---B---B--BB-BBB-BB--BBBBBB-BB-----B--BB--BBBBB--B---B--B--B-B---B---BBBBBB--BB-BBB---BB--BB--B--BB-BBB-BB--BBBBB-B---B-----BB--B-BB-BBB--BB----B-B----B--BBBBBB-BBBBBB--BBB--B---- : Jnet_25
Jnet_5          : ----------B---B--BB------B--BB--BB-B----------------B---B---------------B---BB--B---B---B----B----B--B---B-B---BB--BBB-B------------------B------------B---------BB--B--BB--BB---BB------- : Jnet_5
Jnet_0          : -----------------------------B--B-------------------------------------------B-------B----------------B-----B---------------------------------------------------------B-------------------- : Jnet_0
Jnet Rel        : 998872277101403432432121558999987508885689999987279999999987466423456458999999999999986026812247899999999999988875220331677420889886100189999987752167752577770378999999999999438313688899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.