SILENT_MODE BLOCK_FILE jp_lzuIDbz.concise.blc MAX_NSEQ 399 MAX_INPUT_LEN 401 OUTPUT_FILE jp_lzuIDbz.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 101 388 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 389 101 398 H SPACE SUB_CHARS 1 389 101 398 E SPACE SUB_CHARS 1 389 101 398 - SPACE HELIX 11 392 15 COLOUR_TEXT_REGION 11 392 15 392 50 HELIX 18 392 29 COLOUR_TEXT_REGION 18 392 29 392 50 HELIX 36 392 51 COLOUR_TEXT_REGION 36 392 51 392 50 HELIX 58 392 73 COLOUR_TEXT_REGION 58 392 73 392 50 HELIX 76 392 84 COLOUR_TEXT_REGION 76 392 84 392 50 HELIX 91 392 99 COLOUR_TEXT_REGION 91 392 99 392 50 HELIX 11 397 14 COLOUR_TEXT_REGION 11 397 14 397 50 HELIX 18 397 28 COLOUR_TEXT_REGION 18 397 28 397 50 HELIX 36 397 51 COLOUR_TEXT_REGION 36 397 51 397 50 HELIX 58 397 73 COLOUR_TEXT_REGION 58 397 73 397 50 HELIX 76 397 85 COLOUR_TEXT_REGION 76 397 85 397 50 HELIX 91 397 99 COLOUR_TEXT_REGION 91 397 99 397 50 HELIX 11 398 15 COLOUR_TEXT_REGION 11 398 15 398 50 HELIX 18 398 30 COLOUR_TEXT_REGION 18 398 30 398 50 HELIX 36 398 51 COLOUR_TEXT_REGION 36 398 51 398 50 HELIX 58 398 74 COLOUR_TEXT_REGION 58 398 74 398 50 HELIX 76 398 84 COLOUR_TEXT_REGION 76 398 84 398 50 HELIX 91 398 99 COLOUR_TEXT_REGION 91 398 99 398 50