Jpred secondary structure prediction results

QUERY                  : KLPGKFLQYTVGGSDPHPGIGHEKDIRQNAVALLDQSRRDMFHTVTPSLVFLCLLIPGLHAAFVHGGVPRESYLSTPVTRGEQTVVKTAKFYGEKTTQRDLTELEISSIFSHCCSLLIGVVIGSSSKIKAGAEQIKKRFKTMMAALNRPSHGETATLLQMFNPHEAIDWINGQPWVGSFVLSLLTTDFESPGKEFMDQIKLVASYAQMTTYTTIKEYLAECMDATLTIPVVAYEIRDFLEVSAKLKEDHADLFPFLGAIRHPDAIKLAPRSFPNLASAAFYWSKKENSTIQPGASVKETQLARYRRREISRGEDGAELSGEISAIMKMIGVTGLN : QUERY 
UniRef90_UPI00038C4605 : ------------GTDPHPGIGDEKDLRKNVIALLEADRRALYHAVTPSLVFLCLLIPSLHAALIYGGVPRESYLTTPVTKGDQVLIKTAKLYGEKTVDRELSELEVSSIFNHCCSLLIGVVIGSSAKIRAGAEQIRKRFKTLMASINRPAHGDTATLLQTFNPHEAIDWINSQPWVGSLVLSLLTTDFESPGKEFMEQIRLVASFAQMTTYTTIKEYLNECMDATLMIPAVAGEIKEFLDTASKLKADHGEIFKYLGAIRHPDAIKLAPRSFPNLASAAFYWSKKENPTMSPGAIVKEAQLARYRRREISRGEDGSHIPDEIAQIMKIIGVTGY- : UniRef90_UPI00038C4605
UniRef90_F7GJK5        : -LSRKSKQYPADALEPQPGIGDVKDIEKARKSMLDPAHRSHFHLTTPSLVFLCFIFDGLRKALLSVGVSKRSNIVIGNENKETDTLYSSKF---EDVMPNFTALEMSSILRHCCDLLIGVAAGSSDPICTNSLQVQRQFKAMMISIGRHLHGKSADLLINYNAGPAIYWINSRPWVGGLMFTFLFGEFE-PACELLDQVKVVANKAQMTTYYTVGMFLDQCMDGSIALPAVVSEIPVFEQKKALVKRALGDFFEFGGVLRHPVIGELSPRMFPNLATAANYWAKRRNPTFSGFEALDF------------------------------------- : UniRef90_F7GJK5
UniRef90_UPI0003F124DF : --------------------------------MFNHEHRSRFHPVTASLVFMCYLIPGLWEALNAAGVHQRSYLAAPVKDGDRVAYETLALHLSDVEDRSLSALEMSALLGHCCTLLIGVVIGSSEKIRSGSEQIKRWFKTLMVTLNKQGHSKTATALDLYPPSSAIDWINSQPWAGNLILGLLMTTFESPGRELMDQIRMVASYAQMTTYSTIKQYLDQCMDATLALPAVASEIPKFLYTEQDLRSKLGEWFEFMGAIRHPEVIKLAPRSFPNLSSAALFWSRKESATIQLGSSLTESLLTRARRREIVRSGIGGEMTPNIKKILGLVGVTGY- : UniRef90_UPI0003F124DF
UniRef90_UPI0001D624B0 : ----------------------------------------------------------------------------------TGTLYASKF---EDVLPTFTALEMSSILRHCCDLLIGVAAGSSDPIRTNSLEVQRQFKAMMISIGRPLHSESADLLISYNAGPAIDWINSRPWVGGLMFTFLFGEFESPARELLDQVKVVANKAQMTTYYTVKMFPDQCVDGSIALPAVVSEIPVFEQKKALVKKALGDFFEFGAVLRHPVNGELSPRMFPNLATAANYWAKRRSPTFSPGSTITFPLLQMASARKISRGSD---MDPYTVNILRGYGISGFE : UniRef90_UPI0001D624B0
UniRef90_Q65468        : ------------------------------------------HTVTPSLVFLCLLIPGLHAAFVHGGVPRESYLSTPVTRGEQTVVKTAKFYGEKTTQRDLTELEISSIFSHCCSLLIGVVIGSSSKIKAGAEQIKKRFKTMMAALNRPSHGETATLLQMFNPHEAIDWINGQPWVGSFVLPLLTTDFESPGKEFMDQIKLVASYAQMTTYTTIKEYLAECMDATLTIPVVA------------------------------------------------------------------------------------------------------- : UniRef90_Q65468
UniRef90_Q6P2I7        : ELSGKNRQYPLDALEPQPSIGDIKDIKKAAKSMLDPAHKSHFHPVTPSLVFLCFIFDGLHQALLSVGVSKRSNTVVGNENEERGTPYASRF----KDMPNFIALEKSSVLRHCCDLLIGIAAGSSDKICTSSLQVQRRFKAMMASIGRLSHGESADLLISCNAESAIGWISSRPWVGELMFTLLFGDFESPLHKL-------------------------------------------------------------------------------------------------------------------------------------------- : UniRef90_Q6P2I7
UniRef90_UPI00027F95F8 : ----------------------------------------------------------------------------------------------------LTALEMSSILYHCCDLLIGIATGWSDQIRTNSXQVHRQFKAMMVSIGRPSHGESADLLISYDAGPAIDGINSRAWVGGLMFILLMQEFESPACKLLDQVKVVAHKAQMATYYTLRTLLDQCMDGSIALPAVVSEIPVCQQKEVLVXKVLRNFFECGRVLCHPVIGELSPRMFPNLATAAKYWAKRRNPTFSG------------------------------------------- : UniRef90_UPI00027F95F8
UniRef90_G3KJJ5        : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------AIDWINGQPWAGSLVLALITTDFESPGKEFMDQIKLVASHAQMTTYTTIKEYLGECMDATLIIPAVAYEIKEFLKVSSELKSEHGDLFKYLGAIRHQDAIKLAPRNFPNLASAAFYWSKKENPTIQPGSSVKEAQLARYRRREVTRGEDGAHLSDEIAEIMRMIGVTGLQ : UniRef90_G3KJJ5
UniRef90_S7PTE0        : -----------------------------------------------------------------------------------------------------------------------------------NTQIGRRFSALYSTVKPGVQPPPVDIDPLFDLKETALWLLAKGLDIIIPSTLLEMEDHTPAKAFISQLKLVSSYAEMTPYLTIKSFISDGLSKASMLPGVGAEIQAFLKAEDELKEQHGDMFPYLKCLRLPGHERLAPVNFRNLCKVANARKRWIDGTFGDYKSTEESLSSLTDK----EVEDAVAQPPMKKRMMSQADAEGLK : UniRef90_S7PTE0
UniRef90_G0WXP8        : -----------------------------------------------------------------------------------------------------------------------------SPVSLENASIFRRYSAMVAGKNLPTANAVKAFIECLEAGHAVLWANDKIAKKMIAWVLKSNPATEADKALVSQMKMVYGGAEMAFAKTAAEFLAGCDTHLKLLPQVVEDGERYLEVKEALEARHHEHYLHLRLLKHADADSIAPRAFPYLAGAAAYWTNRRHAAAAGAAVYIAPLMVRTEGYTVTEMDDASRT--KISADMKLATATKL- : UniRef90_G0WXP8
UniRef90_S7PTE8        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------WLSSNELDTIILGTLLELEDHSTGKAFISQLKLVSSYAEMTPYLTIKSFINDGLSKASMLPGVGSEIQAFSKAEEELKEQHGDMFPYLKCLRLPGHERLAPVNFSNLCKVANTRKRRIDRTFRDYKSTKESMSSLTDR----EVEEAVAQPPIKKNMMSQVEAEGLK : UniRef90_S7PTE8
UniRef90_C4NFM0        : ---------------------------------------------------------------------------------------------------------------------------------LNSEYIKKRWSALLGSRNPGLENKLMS-LALVDAKR----IAGLKLKAEIIRAVRDYDDSTLGQALIAQVRMVYKGHGMTMLSEMDLLVKQPMRRVLLQSAVAEEALKFEESYQKAKERHGKDFEYLGALGISD-ETLHHRQYPNLYFAARAVAQTEKRV---GTGMQFSELPTNVNQEILRTDTKREITRDLVEKLRLLGITGL- : UniRef90_C4NFM0

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-- :
OrigSeq                : KLPGKFLQYTVGGSDPHPGIGHEKDIRQNAVALLDQSRRDMFHTVTPSLVFLCLLIPGLHAAFVHGGVPRESYLSTPVTRGEQTVVKTAKFYGEKTTQRDLTELEISSIFSHCCSLLIGVVIGSSSKIKAGAEQIKKRFKTMMAALNRPSHGETATLLQMFNPHEAIDWINGQPWVGSFVLSLLTTDFESPGKEFMDQIKLVASYAQMTTYTTIKEYLAECMDATLTIPVVAYEIRDFLEVSAKLKEDHADLFPFLGAIRHPDAIKLAPRSFPNLASAAFYWSKKENSTIQPGASVKETQLARYRRREISRGEDGAELSGEISAIMKMIGVTGLN : OrigSeq

Jnet                   : -----------------------HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH-------EEEEE------EEEHH-------------HHHHHHHHHHHHHHHHHHHE-----------HHHHHHHHHHHHH--------HHHHH------HHHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHH-----HHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHH----------E----------EEEEE-------HHHHHHHHH------- : Jnet
jhmm                   : -----------------------HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH-------EEEE-------EHHHHHHH----------HHHHHHHHHHHHHHHH-EEEE----------HHHHHHHHHHHH--------HHHHHHH-----HHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHH-----HHHHHHHHHHH--HH-HHH----H--HHHHHHHHHHHHHHH--HHHH-------------------HHHHHHHHHHHH---------------------EEEEE-------HHHHHHHH-------- : jhmm
jpssm                  : ----------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHH--------EEEEEE-----EEEE--------------HHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHH-------------------HHHHHHH---HHHHHHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHH---------EEEHHH-HH----EEEE--------HHHHHHHHHH------ : jpssm

Lupas 14               : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : --------B---B------B-----B--BB--BB---BB--BB-BBBBBBBBBBBB-BBB-BBB-B-B---BBBBBBB------BB-BB-BBB-------BB-BBBBBBB-BBBBBBBBBBBB----B---B--B--BB-BBBBBB-------BBBBB-BB-B--BBBBB----BBBBBBBBBB---B---B--BB-BB-BBB-BB-BBBB-BB--BB--BB-BBBBBBBBB--B--B--B---B---B--BB-BB-BB-B--B--BB---BBBBB-BBBBB------BB--B--B-B--B--B--B-B--B-----B---BB-BB--B-B--B- : Jnet_25
Jnet_5                 : ---------------------------------B--------------BBBBBBB---B--BB----B-------------------B--------------------B---BB-BBBBBB-------------B---B--B--------------BB-------BB--B--------BB--B-----------B---B--B--------B--B--BB------B-BB--BB--B---------B-------B--B-BB-------B----B--BB-BB-----------------------------B----------------B--------- : Jnet_5
Jnet_0                 : ----------------------------------------------------B----------------------------------------------------------------BBB-------------------------------------------------B-------------------------------------------B------------------------------B------------------------------------------------------------------------------------------ : Jnet_0
Jnet Rel               : 99876455456777777776510899999998713233324677751389999862428887621678887448893147875032001127777777764279999999999999933100676413256468999999888704678777011111177764278875157107899988616888535899999999874588637999999986157111479422470179999999999998601566501446776651157776328999999986216788887431101202114514774078766527899999831247899 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.