SILENT_MODE BLOCK_FILE jp_a03_iNZ.concise.blc MAX_NSEQ 103 MAX_INPUT_LEN 105 OUTPUT_FILE jp_a03_iNZ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 116 92 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 93 116 102 H SPACE SUB_CHARS 1 93 116 102 E SPACE SUB_CHARS 1 93 116 102 - SPACE STRAND 6 96 11 COLOUR_TEXT_REGION 6 96 11 96 51 STRAND 24 96 24 COLOUR_TEXT_REGION 24 96 24 96 51 STRAND 28 96 33 COLOUR_TEXT_REGION 28 96 33 96 51 STRAND 39 96 47 COLOUR_TEXT_REGION 39 96 47 96 51 STRAND 55 96 59 COLOUR_TEXT_REGION 55 96 59 96 51 STRAND 63 96 68 COLOUR_TEXT_REGION 63 96 68 96 51 STRAND 80 96 85 COLOUR_TEXT_REGION 80 96 85 96 51 STRAND 90 96 96 COLOUR_TEXT_REGION 90 96 96 96 51 STRAND 106 96 109 COLOUR_TEXT_REGION 106 96 109 96 51 STRAND 6 101 11 COLOUR_TEXT_REGION 6 101 11 101 51 STRAND 28 101 33 COLOUR_TEXT_REGION 28 101 33 101 51 STRAND 39 101 47 COLOUR_TEXT_REGION 39 101 47 101 51 STRAND 55 101 59 COLOUR_TEXT_REGION 55 101 59 101 51 STRAND 64 101 68 COLOUR_TEXT_REGION 64 101 68 101 51 STRAND 81 101 85 COLOUR_TEXT_REGION 81 101 85 101 51 STRAND 90 101 98 COLOUR_TEXT_REGION 90 101 98 101 51 STRAND 106 101 109 COLOUR_TEXT_REGION 106 101 109 101 51 STRAND 6 102 10 COLOUR_TEXT_REGION 6 102 10 102 51 STRAND 23 102 24 COLOUR_TEXT_REGION 23 102 24 102 51 STRAND 28 102 33 COLOUR_TEXT_REGION 28 102 33 102 51 STRAND 39 102 47 COLOUR_TEXT_REGION 39 102 47 102 51 STRAND 55 102 59 COLOUR_TEXT_REGION 55 102 59 102 51 STRAND 63 102 68 COLOUR_TEXT_REGION 63 102 68 102 51 STRAND 79 102 86 COLOUR_TEXT_REGION 79 102 86 102 51 STRAND 90 102 95 COLOUR_TEXT_REGION 90 102 95 102 51 STRAND 106 102 107 COLOUR_TEXT_REGION 106 102 107 102 51 HELIX 104 102 105 COLOUR_TEXT_REGION 104 102 105 102 50 HELIX 108 102 109 COLOUR_TEXT_REGION 108 102 109 102 50