SILENT_MODE BLOCK_FILE jp_oX4r778.concise.blc MAX_NSEQ 970 MAX_INPUT_LEN 972 OUTPUT_FILE jp_oX4r778.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 148 959 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 960 148 969 H SPACE SUB_CHARS 1 960 148 969 E SPACE SUB_CHARS 1 960 148 969 - SPACE HELIX 3 963 16 COLOUR_TEXT_REGION 3 963 16 963 50 HELIX 20 963 39 COLOUR_TEXT_REGION 20 963 39 963 50 HELIX 47 963 70 COLOUR_TEXT_REGION 47 963 70 963 50 HELIX 74 963 90 COLOUR_TEXT_REGION 74 963 90 963 50 HELIX 97 963 110 COLOUR_TEXT_REGION 97 963 110 963 50 HELIX 119 963 130 COLOUR_TEXT_REGION 119 963 130 963 50 HELIX 136 963 146 COLOUR_TEXT_REGION 136 963 146 963 50 HELIX 3 968 16 COLOUR_TEXT_REGION 3 968 16 968 50 HELIX 20 968 39 COLOUR_TEXT_REGION 20 968 39 968 50 HELIX 47 968 70 COLOUR_TEXT_REGION 47 968 70 968 50 HELIX 74 968 90 COLOUR_TEXT_REGION 74 968 90 968 50 HELIX 97 968 110 COLOUR_TEXT_REGION 97 968 110 968 50 HELIX 119 968 130 COLOUR_TEXT_REGION 119 968 130 968 50 HELIX 136 968 146 COLOUR_TEXT_REGION 136 968 146 968 50 HELIX 3 969 17 COLOUR_TEXT_REGION 3 969 17 969 50 HELIX 19 969 39 COLOUR_TEXT_REGION 19 969 39 969 50 HELIX 47 969 70 COLOUR_TEXT_REGION 47 969 70 969 50 HELIX 75 969 91 COLOUR_TEXT_REGION 75 969 91 969 50 HELIX 97 969 111 COLOUR_TEXT_REGION 97 969 111 969 50 HELIX 119 969 130 COLOUR_TEXT_REGION 119 969 130 969 50 HELIX 136 969 146 COLOUR_TEXT_REGION 136 969 146 969 50