Jpred secondary structure prediction results

QUERY                  : ALPGPSQRQLEVYDQCLIGAARWPDDSSKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLD : QUERY 
UniRef90_G3CSE4        : -LRGPANSKLSSEEQSLVGAARWPDDSNKSNTQDNKKYCKSLYKASRIAGGSIASGQINSFNDLWQKATQWRLSRISSGDASKGDFAAERMPNTRFVTSLRRPYHSVIERARNHPDAETELYEGEYFKEIEVKVYRQCGAISGETIPMTTVSAAVDDNAISARLRNLPKDKRQQAR-QSMASSHPNMITHTSAEYIKTIRDHLESLYLQAIDPSLEKHEAFELIARLHWWAASAAPDKRGSAAKAEFAARSIASAHGIEMPPFRHGIVPDIEAMLRSESQFVADYPNFFE : UniRef90_G3CSE4
UniRef90_Q4ZX49        : -LQGPQVSRLMPYQQALVGVARWPNPHNRDDAPHQMEYGESFYHKSRELGASVANGEIETFQELWSEARDWRASRAGQDARL---FSSSRDPNRAFVTPITGPYEFLKDRFANRKDGEKHKMLDFL---PHSNTFRFHGKIDGERLPLTWISISSDRRADRDPYQRLRDQ-GMNDV------GEPNVMLHTQAEYVPKIMQHVEHLYKAATDAALSDANALKKLAEIHWWTVQAVPDFRGSAAKAELCVRSIAQARGMDLPPMRLGIVPDLEALTMPLKDFVKSYEGFFE : UniRef90_Q4ZX49
UniRef90_Q7X1Q9        : -LQGPQASRLMPYQQALIGVARWPDSHNRDDAPHQMEYGQSFYNKSRALGGSVANGEIGSFQELWDEARDWRASRA---GADADVFLSPRDPNREYATPLAEQYSYIKDRFANRKDGEVGSPADFL---PKSKTFRISGKIDGEQIPLTRITVSKDRHADRDPYPRLRNQ-------GHGDLGEPNLMSHTSAEYVPQIMSHVESLHQSATDPSVSDSHALKTLAEMHWWMAHAMPDKRGSAAKTELCVRSIAQARGMDLPPMRLGIVPDLEALTMPLKDFVKSYQGFFE : UniRef90_Q7X1Q9
UniRef90_P13836        : GLRGPAKHSMLSLDEILVGAARWPDDSNKSNTQENKRYCESLYQAARIAGGSIASGRVTSFDGLWRNATKWRLSRILSGDASKIDFATVRMPNTRFVTSLRRPYHSVIERVRNHSDANSEIYEGEYLGGIETKVYRQHGTISSTTIPMTIVSAVADDDDIHERLKSLPKNER-RHLKDLMAASHPNMITHTDAVYLPMIKDHLESLYLQAIDPSLEQHEALELIARIHWWAASAAPDRRGSAAKAEFAARSIAFAHGIELPPFEHGAVPDIEAMLRSEEQFVEDYPNLFE : UniRef90_P13836
UniRef90_Q5D157        : ----PERSELTWHQQSLVGVARWPDEYNRDHVPLQMEYGRSFWNESRKIGSALANGEIQNFEDLWEKARDWRCSMANHDENI---FKKPRNSEFPFTTPLINQYNYIKERYSARTDGSLQKLDDEGL-LPPAKEFLITDKIFGEPISLTKIVCSSDSSAHRD--QRRYSDLWSRGLDY----GEPHYIQHTSSEEVPKILHHVNDLFNEVLQSNLSTKKALKFLGEIHWWLAHAMPDERGSAAKSELCVRAIAQAKGLDLPPMKSGIVPDLEAMTMSREQFIKQYPSMFD : UniRef90_Q5D157
UniRef90_H1XN83        : -LPGPSTS-LDWEEQSLVGAARWPSMYNQSHTDENKDYCRSMYRSSREAGSRIASGQINSFSELWNCATEWRLGRLSYNAPGREAFATQREAGSVFNTKLDMQYASIIPMIISNSKSKRKRYGGPYLSGIECKVYKQKGKIHGQEIPLNELWAAIDQRQVAVKLQEVYNQVDFEVLEDTLQRNHPNNIVHTDARYLSVIKGHLEQLFNQA-KSPLRKREALDLIARIHWWAASAAPDMRGSAAKAEFAARALANAHGIEFPPFRDGIVPDIEAMLSSEKNFVERYSSFME : UniRef90_H1XN83
UniRef90_R9NS07        : -LPGPSPSQLNYYQQSLIGVARWPDPKYNNETPQQQEYGRAFWHGTRNAGAEIAEGSINSFSQLWNRARQWRQSITEAHD--YDLFGKQRYEGDVNKTPLKGRYEYLLERYKDRNDGEVSDY-----GDISFSDFTLREALNNREIELSRVSIGKNNTFYE----------GSSETK------NLNFISHTNPIYHPAILDHVEELYKEAIKAERSDSDVLNILGETHWWLANAMLDERGSAAKAEFCVRAIAQARGMDLPPMKHGIVPDIEAMSTSRNEFVENYSSFFE : UniRef90_R9NS07
UniRef90_A0A038GIW4    : ----PAQTGLTYYQQSLIGVARWPDPYNQDHLPHQMEYGRSFFDASRHAGAGIASGQVQAFSQLWALAQRWRS---EAAGGDYETFGSERYPNHNPTTPLANQYAYILDRYRNREDGEFS----EDVEGVPTHEFPLRDEINGKPITLSTVVVSADPDAN--RYDSRYSAIR------HLEAGEPFYIRHTFSADVPEVLAHVEELYNQALDASVSDSQALSILGEIHWWVANAMPDHRGSAAKTEFSVRAIAMARGMELPPMRHGIVADLEAMTTSREAFVRHYNNFFD : UniRef90_A0A038GIW4
UniRef90_UPI0002F8E4BD : ALPGPAATGLPPSQATLIGVARWPDPHGMETSARNKAYGRRFHETTLDAGQRIADGQIQNFRQLWNFARQWVLDDPDRGGPGKAAFASGYPRQQDVTTPLGGRYGYVIERARQTTAIANGLAQQSGLALPPHHAFQMQGMLDGRPVALTTIRVAVNPEDFLHPVAKQLSEARGSGLRNTLSL--PHSIEHTHFAAIPSIVNHVEHLYGSLMERPRTREELLPRLGELHWWMAHAMPDGRGSAAKTEMGMRAIALAHGIALPPFRRGIVPDLEAFMQDMETFSQGYADMLE : UniRef90_UPI0002F8E4BD
UniRef90_F2ZCK7        : -----------------------------------MEYGQSFYHKSRELGAAIAGGNINSFSEAWDEARDWRSARA---GDKAKEFADIRDPNREFITPLTGPYEYIKDRFAKRKDADIRRPTGTL---PKSKVFKVYGKIDGEPLLLTCIWMTTDRHADRTKEPYPNRRIGMNDI------GEPYVIVHTDAEHIPKILQHVEGLYGVATDATISDARALKTLAEIHWWGVHAVPDMRGSAAKAELCVRSIAQARGMDLPPMKPGIVPDLEALTMNLKDFVNSYEGFFD : UniRef90_F2ZCK7
UniRef90_W4S6Q5        : ----------------MIGVARWPDPRDTSGAPANVAYGHRFADAVDQAALQLNEGELKSFADLWGFARYWRSNQ----EGATSDFGQSRSPSTSSMTPVTDRYEFLADRV---KQANAAEVSNHFMGRSDIQQVKQHVEIEGKMIRLTEIRLP----YLAESSFTELADIGGMIRP---------LISHVPASRIPTLLNEVDRSFA-VLRKTLRLEDRMQILGKMHWLLAHAMPDVRGSAAKAEMCIRAIGTSLGLTMPPFRHGVIPDLEAFVVPMEDFSKGYSALFE : UniRef90_W4S6Q5
UniRef90_L7H165        : ---------MLPEERAKIGVARWPDPHDTSDSAANVAYGLRFAIAVDDAARQLGSGQLRNIEDVWRFATHWRM----QQGDATGDFSERRLSNGAFSTPITGKYEFVADKAKNAA--AAKLINYPGRPDIHLVQLRQSVQINGTSIPLTEIR-------LPYRADSRLTELADDAM--------PPMISHTSASRIPVLLQEVERL-RMTLPARSDVNDRIQTLGHMHWLLANAMPDKRGSGAKSEMCIRAIGTSLGLTMPPFKHGVIPDLEAFVTPMEEFRRGYAALFE : UniRef90_L7H165
UniRef90_G9EIQ8        : --------------------------RNSSPSFDEKVWGEDGLNTAREAGAKLKEEQFPNLLTFYTFIARKRASKKTRIAASF-AFGSFRDADERLSTCLADQYGYMLELFFPKPDIKKRVLLDKNYKGIPVEVFAIRGTVHREE----------------DKNPYLFKEAGDYERPFTTIKTYKSYLLHPNLERLDEFFNLVETKFPDLLDLN-NREKSINSLAEIVWTLAQAVPTKRGNASIIERLYRSVQLIHDEHLPQYRLPLNIDLLAIVTPSEQFRQIFRALF- : UniRef90_G9EIQ8
UniRef90_F3G209        : --------------------------------------------------------------------------------------------------------------------------------LPHSNTFRFHGKIDGERLPLTWISISSDRHADRDPYQRLRDQ-GMNDV------GEPNVMLHTQAEYVPKIMQHVEHLYKAATDAALSDANALKKLAEIHWRTVQAVPDFRGSAAKAELCVRSIAQARGMDLPPMRLGIVPDLEALTMPLKDFVKSYQGFFE : UniRef90_F3G209
UniRef90_K2AGE7        : ---------------------------------------------------------------------------------------------------------------------------------------------NRTRIELSNVLYLPKINSSHMKHYNLPNSV----------KNKPGFILHAEYEHIAYIFNELDPIIWELIDPSLNETRFWFLLAQTIWFLGNCTPLQAGSSATTENFMRTVLYMHGFSLEPF--GINPNIAVKVIPREEFVKTFLDYF- : UniRef90_K2AGE7
UniRef90_D3HJH9        : -------------------------------------------------------------------------AKILKHGPLRHQFGLINKPGFAS----TDEFNLCRDLPSQKNEIYAHIHELINKPAENIEVTEQKTEYEGKTRYIIRINLPADKKALHEKNMDTLHDYGRQDNRTTLVIDHPFAENYTSSSYFQVQFELIQPYFESCWRSTESIHDFLINAGKIAHALARLQPVGRGNSAIVEWMIRGLAKAKNIELGPFNHELGWDFKAFLTPDSEIYAQW----- : UniRef90_D3HJH9
UniRef90_U1RYK3        : --------------------------------------------------------------QLAAFALEKLSEFLLQTGRSKEV--SRLRESEDFGTPVKAQYSFALPLIRNV----------FYFSD--------DVKLNKHDYS---VSYGLFYNDLQVNNIMETKQIWSGPIDETHAAPN---IVWTHLAPLNATWPNIENLFAEIWSMDLSLTVFYEKLAELSWLIGNTQPLERGTGSFAETVVALMHVHHGLNPPILKNDFPLDVLNITFPLETYKNIFPYFFE : UniRef90_U1RYK3

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281------- :
OrigSeq                : ALPGPSQRQLEVYDQCLIGAARWPDDSSKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLD : OrigSeq

Jnet                   : -----------HHHHHHEEEE-----------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHH-------HHH-----------EEEEEEEEE----EEEEEEEE-----------HHHHHHH----------------------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH---------------HHE-----HHHHHHHH---- : Jnet
jhmm                   : --------------EEEEEEE-----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HH-------------------HHHHHHHH-------HHH-----------EEEEEEEEE----EEEEEEEE-----------HHHHHHHH----HHH----------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH----------------EE-----HHHHHHHH---- : jhmm
jpssm                  : -----------HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----------------------------HHHHHHHHHH------HHH-----------EEEEEEEEE---EEEEEEEEEE---------------------------------EE----HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---------------HHHH----HHHHHHHH---- : jpssm

Lupas 14               : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---------B-----BBBBBBBBB-------B--B--BB--BB--B--BB--B----B-BB--BB--B--BBB--------B---B---------BBBBB---B-BBB-BB-----B----B----B--B-B-BB-B-B-B----B-BBBBBBBB----B---B--BB--B----B--BB------BB-BB-B-BB--BB--B--BB--BB---B----BB--BB-BBBBBB-BBBB--BBBBBBBBBBBBBB-B--B-B--B---BBB-B-BBBB----BB--B--BB- : Jnet_25
Jnet_5                 : -----------------B-BB-----------------B--B---B--BB----------B--BB--B-----------------B-------------B---B--B---------------------------B---------------B-B----------------------------------B----------B---B---B--B-------------BB-B---BB-B----------B--BB-BBB-----------------B-B-------B--------- : Jnet_5
Jnet_0                 : --------------------------------------B------------------------B---B----------------------------------------------------------------------------------B------------------------------------------------------------------------B-------B------------B---B----------------------------------------- : Jnet_0
Jnet Rel               : 89888887753023310023167777777752789999999999999999986236870278999999998620231066662244566777777777776435768887514765302202567777777358899998646217757888705776666664121111017777223677777743216640399999999999987407875279999999999999982347766417999999999998515777777777763201004774689888625999 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.