SILENT_MODE
BLOCK_FILE jp_s68YpeD.concise.blc
MAX_NSEQ 1053
MAX_INPUT_LEN 1055
OUTPUT_FILE jp_s68YpeD.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 95 1042   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1043 95 1052 H SPACE
SUB_CHARS 1 1043 95 1052 E SPACE
SUB_CHARS 1 1043 95 1052 - SPACE
STRAND 3 1046 8
COLOUR_TEXT_REGION 3 1046 8 1046 51
STRAND 32 1046 41
COLOUR_TEXT_REGION 32 1046 41 1046 51
STRAND 47 1046 52
COLOUR_TEXT_REGION 47 1046 52 1046 51
STRAND 72 1046 78
COLOUR_TEXT_REGION 72 1046 78 1046 51
HELIX 14 1046 27
COLOUR_TEXT_REGION 14 1046 27 1046 50
HELIX 83 1046 93
COLOUR_TEXT_REGION 83 1046 93 1046 50
STRAND 3 1051 8
COLOUR_TEXT_REGION 3 1051 8 1051 51
STRAND 32 1051 41
COLOUR_TEXT_REGION 32 1051 41 1051 51
STRAND 47 1051 52
COLOUR_TEXT_REGION 47 1051 52 1051 51
STRAND 56 1051 59
COLOUR_TEXT_REGION 56 1051 59 1051 51
STRAND 73 1051 77
COLOUR_TEXT_REGION 73 1051 77 1051 51
HELIX 14 1051 27
COLOUR_TEXT_REGION 14 1051 27 1051 50
HELIX 83 1051 93
COLOUR_TEXT_REGION 83 1051 93 1051 50
STRAND 2 1052 8
COLOUR_TEXT_REGION 2 1052 8 1052 51
STRAND 32 1052 41
COLOUR_TEXT_REGION 32 1052 41 1052 51
STRAND 47 1052 52
COLOUR_TEXT_REGION 47 1052 52 1052 51
STRAND 72 1052 78
COLOUR_TEXT_REGION 72 1052 78 1052 51
HELIX 14 1052 26
COLOUR_TEXT_REGION 14 1052 26 1052 50
HELIX 83 1052 93
COLOUR_TEXT_REGION 83 1052 93 1052 50