QUERY : MTKQEKTALNMARFIRSQTLTLLEKLNELADAADEQADICESLHDHADELYRSCLARFG : QUERY
UniRef90_L8AE36 : MTKQEKTALNMARFIRSQTLTLLEKLNE--LDADEQADICESLHDHADELYRRGS---- : UniRef90_L8AE36
UniRef90_UPI0001E8A751 : ----------MVCFIRNRIPVLPEKCHE--QNADDHADICDPPHNHADELYRSGFAYFG : UniRef90_UPI0001E8A751
UniRef90_W1I7M0 : VTRQESAALNMAKFIRAQTLLLLERLEQM--DLDEAAGCCEHLHDQAEALYAMLNAQIG : UniRef90_W1I7M0
UniRef90_E6BCG7 : MNKQQQTALNMAKFIKSQSLTLLEKLD--SLDADAQAAMCEKLHELAEELQNSIQTRF- : UniRef90_E6BCG7
UniRef90_L5VYU1 : MNRQESATLNMDKFIRTQTLLLLEKIDQ--LDLDDGATECEKLHEQAEKLYQKLLAKL- : UniRef90_L5VYU1
UniRef90_K8ZEZ7 : MTKQEKTALNMAKFIRDQSLL--LLEKLNELDMDDPADMCERLHEDAEKLWLVMRGKLG : UniRef90_K8ZEZ7
UniRef90_E9VI01 : VTKQEKTALNMARFIRSQTLTLLEKLNE--LDADDQADICE------------------ : UniRef90_E9VI01
UniRef90_N2FUE3 : MTKQEKTALNMAKFIQGQSLL--LLDKLNELNLDIEADMCEKLHEDAEMLCRTLYGRLN : UniRef90_N2FUE3
UniRef90_UPI0003EB4BA9 : MNRQESAVLNIAKFIRAQTLL--LLERIDLLDFDDEATDCEQLHEQAEALYRKLSARL- : UniRef90_UPI0003EB4BA9
UniRef90_D3INX7 : MNKQQKTAVNMAKFIQDQSLL--LLDRLNELDLDHEADFCEKLHEDAERLYRSLSARLN : UniRef90_D3INX7
UniRef90_A0A028UDW2 : --------------IRSQTLTLLEKLNE--LDADEQADICESLHDHADELYRSCLARFG : UniRef90_A0A028UDW2
UniRef90_V1E2V5 : MNKQQQAVLNMAGFIKSQSLTLLEKLD--ALDADEQAAMCEKLHELAEE---------- : UniRef90_V1E2V5
UniRef90_D2TE22 : MNKQETTTLNMAKFIRGQTLL--LLEKLDVLDLDDEAADCEKLHEQAEALYQKLSGRL- : UniRef90_D2TE22
UniRef90_D3GMY2 : MNKQEKTALNMTKFIQAQTLLQLEKLNE--LNLDEIADYCERLHELSEQLHEDLR---- : UniRef90_D3GMY2
UniRef90_Q9KI27 : MKKQEATAINMAKFIKAQLLILLEKLNE--LDLDERANECEQLHDLAEQLHRHLREQL- : UniRef90_Q9KI27
UniRef90_H4SKZ0 : ----------MAKFIKSQSLTLLEKLD--SLDADAQAAMCEKLHELAEELQNSIQTRF- : UniRef90_H4SKZ0
UniRef90_Q52624 : MTKQEKAVVNMAKFLQAQSLLLLLEKLNESDKLDAETNLCEELHEHAESLHQQLSAKVG : UniRef90_Q52624
UniRef90_Q8GGG7 : ITKQQKMTLNMAKFIQAQSLL--LLEKLNELDLDTEANMCEKLHEDAEQLFRTLALRL- : UniRef90_Q8GGG7
UniRef90_B8X8Z9 : MTRQEKTALNMAKFIQAQTLL--LLEKLNELNLDEMANQCERLHELSEQLHDGL----- : UniRef90_B8X8Z9
UniRef90_K8W629 : MTKQEKAVLNMAKFQSQSLLLLEKLNELDSNNLDAETNLCEELHEQAESLHQKLRAKL- : UniRef90_K8W629
UniRef90_W1FG59 : MTKPQETALDMAKFIQAQSLLLLDKLNELNLDL--EADMCEQFHEDAD----------- : UniRef90_W1FG59
: 1---------11--------21--------31--------41--------51------- :
OrigSeq : MTKQEKTALNMARFIRSQTLTLLEKLNELADAADEQADICESLHDHADELYRSCLARFG : OrigSeq
Jnet : ---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH--- : Jnet
jhmm : ----HHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-- : jhmm
jpssm : --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---- : jpssm
Lupas 14 : ----------------------CCCCCCCCCCCCCC----------------------- : Lupas 14
Lupas 21 : ----------------------ccccccccccccccccccccc---------------- : Lupas 21
Lupas 28 : -------------------------cccccccccccccccccccccccccccc------ : Lupas 28
Jnet_25 : ------BBB-BB-BB---BBBBB--B------B---B-BB--BB--B--BB--B----- : Jnet_25
Jnet_5 : ----------BB--B------B-----------------B------B--B---B----- : Jnet_5
Jnet_0 : ----------------------------------------------B------------ : Jnet_0
Jnet Rel : 98419999999998732443289999999861777612331338999999888622299 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.