SILENT_MODE BLOCK_FILE jp_kS1e2ie.concise.blc MAX_NSEQ 961 MAX_INPUT_LEN 963 OUTPUT_FILE jp_kS1e2ie.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 134 950 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 951 134 960 H SPACE SUB_CHARS 1 951 134 960 E SPACE SUB_CHARS 1 951 134 960 - SPACE STRAND 7 954 12 COLOUR_TEXT_REGION 7 954 12 954 51 STRAND 30 954 31 COLOUR_TEXT_REGION 30 954 31 954 51 STRAND 38 954 42 COLOUR_TEXT_REGION 38 954 42 954 51 STRAND 46 954 50 COLOUR_TEXT_REGION 46 954 50 954 51 STRAND 65 954 68 COLOUR_TEXT_REGION 65 954 68 954 51 STRAND 88 954 88 COLOUR_TEXT_REGION 88 954 88 954 51 STRAND 97 954 102 COLOUR_TEXT_REGION 97 954 102 954 51 STRAND 108 954 113 COLOUR_TEXT_REGION 108 954 113 954 51 HELIX 15 954 25 COLOUR_TEXT_REGION 15 954 25 954 50 HELIX 72 954 83 COLOUR_TEXT_REGION 72 954 83 954 50 HELIX 120 954 122 COLOUR_TEXT_REGION 120 954 122 954 50 STRAND 7 959 12 COLOUR_TEXT_REGION 7 959 12 959 51 STRAND 29 959 32 COLOUR_TEXT_REGION 29 959 32 959 51 STRAND 38 959 42 COLOUR_TEXT_REGION 38 959 42 959 51 STRAND 47 959 51 COLOUR_TEXT_REGION 47 959 51 959 51 STRAND 65 959 69 COLOUR_TEXT_REGION 65 959 69 959 51 STRAND 87 959 88 COLOUR_TEXT_REGION 87 959 88 959 51 STRAND 96 959 102 COLOUR_TEXT_REGION 96 959 102 959 51 STRAND 108 959 113 COLOUR_TEXT_REGION 108 959 113 959 51 HELIX 15 959 25 COLOUR_TEXT_REGION 15 959 25 959 50 HELIX 72 959 83 COLOUR_TEXT_REGION 72 959 83 959 50 HELIX 120 959 122 COLOUR_TEXT_REGION 120 959 122 959 50 STRAND 7 960 12 COLOUR_TEXT_REGION 7 960 12 960 51 STRAND 38 960 43 COLOUR_TEXT_REGION 38 960 43 960 51 STRAND 45 960 50 COLOUR_TEXT_REGION 45 960 50 960 51 STRAND 65 960 68 COLOUR_TEXT_REGION 65 960 68 960 51 STRAND 97 960 102 COLOUR_TEXT_REGION 97 960 102 960 51 STRAND 108 960 113 COLOUR_TEXT_REGION 108 960 113 960 51 HELIX 15 960 26 COLOUR_TEXT_REGION 15 960 26 960 50 HELIX 71 960 83 COLOUR_TEXT_REGION 71 960 83 960 50 HELIX 117 960 122 COLOUR_TEXT_REGION 117 960 122 960 50