QUERY           : MNQGKIWTVVNPAIGIPALLGSVTVIAILVHLAILSHTTWFPAYWQGGVKKAA : QUERY 
UniRef90_H0SQW0 : MNQGRIWCVVNPTVGLPLFLGSVALTSLCVHYTVLSHTTWMGAYWEGGKSKKA : UniRef90_H0SQW0
UniRef90_H0T3Q9 : --------MVHPTVGLPLFLGSVALTSLCVHYTILSHTTWMGAYWEGGKSKKA : UniRef90_H0T3Q9
UniRef90_A9DA09 : MNNAKMWLVVKPTVGVPLFLTAVAVGSFAVHVSVLRNTTWLPQFLSGG----- : UniRef90_A9DA09

                : 1---------11--------21--------31--------41--------51- :
OrigSeq         : MNQGKIWTVVNPAIGIPALLGSVTVIAILVHLAILSHTTWFPAYWQGGVKKAA : OrigSeq

Jnet            : ----EEEEEE-----HHHHHHHHHHHHHHHHHHHHHH---HHHHHH------- : Jnet
jhmm            : ----EEEEEE-----HHHHHHHHHHHHHHHHHHHHHH---HHHHH-------- : jhmm
jpssm           : -----EEEEE----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH----- : jpssm

Lupas 14        : ----------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------- : Lupas 28

Jnet_25         : ---B-BBBBBBBBBBBB--B--BBBBBBBBBBBBB--BBBBBBBB-B------ : Jnet_25
Jnet_5          : -----B---B---B----B------B-BBB-B-BB------------------ : Jnet_5
Jnet_0          : ---------B------------------------------------------- : Jnet_0
Jnet Rel        : 99972688734532155899999999999999987517870267721335689 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.