SILENT_MODE BLOCK_FILE jp__Paf8WS.concise.blc MAX_NSEQ 283 MAX_INPUT_LEN 285 OUTPUT_FILE jp__Paf8WS.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 105 272 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 273 105 282 H SPACE SUB_CHARS 1 273 105 282 E SPACE SUB_CHARS 1 273 105 282 - SPACE STRAND 4 276 9 COLOUR_TEXT_REGION 4 276 9 276 51 STRAND 15 276 19 COLOUR_TEXT_REGION 15 276 19 276 51 STRAND 29 276 36 COLOUR_TEXT_REGION 29 276 36 276 51 STRAND 46 276 53 COLOUR_TEXT_REGION 46 276 53 276 51 STRAND 58 276 66 COLOUR_TEXT_REGION 58 276 66 276 51 STRAND 73 276 74 COLOUR_TEXT_REGION 73 276 74 276 51 STRAND 84 276 90 COLOUR_TEXT_REGION 84 276 90 276 51 STRAND 94 276 102 COLOUR_TEXT_REGION 94 276 102 276 51 STRAND 3 281 9 COLOUR_TEXT_REGION 3 281 9 281 51 STRAND 15 281 19 COLOUR_TEXT_REGION 15 281 19 281 51 STRAND 29 281 36 COLOUR_TEXT_REGION 29 281 36 281 51 STRAND 46 281 53 COLOUR_TEXT_REGION 46 281 53 281 51 STRAND 58 281 66 COLOUR_TEXT_REGION 58 281 66 281 51 STRAND 73 281 74 COLOUR_TEXT_REGION 73 281 74 281 51 STRAND 84 281 90 COLOUR_TEXT_REGION 84 281 90 281 51 STRAND 94 281 102 COLOUR_TEXT_REGION 94 281 102 281 51 STRAND 5 282 10 COLOUR_TEXT_REGION 5 282 10 282 51 STRAND 15 282 19 COLOUR_TEXT_REGION 15 282 19 282 51 STRAND 29 282 36 COLOUR_TEXT_REGION 29 282 36 282 51 STRAND 46 282 52 COLOUR_TEXT_REGION 46 282 52 282 51 STRAND 59 282 65 COLOUR_TEXT_REGION 59 282 65 282 51 STRAND 73 282 73 COLOUR_TEXT_REGION 73 282 73 282 51 STRAND 83 282 90 COLOUR_TEXT_REGION 83 282 90 282 51 STRAND 95 282 98 COLOUR_TEXT_REGION 95 282 98 282 51