SILENT_MODE
BLOCK_FILE jp_sWzqkhk.concise.blc
MAX_NSEQ 700
MAX_INPUT_LEN 702
OUTPUT_FILE jp_sWzqkhk.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 96 689   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 690 96 699 H SPACE
SUB_CHARS 1 690 96 699 E SPACE
SUB_CHARS 1 690 96 699 - SPACE
STRAND 10 693 15
COLOUR_TEXT_REGION 10 693 15 693 51
STRAND 21 693 28
COLOUR_TEXT_REGION 21 693 28 693 51
STRAND 33 693 39
COLOUR_TEXT_REGION 33 693 39 693 51
STRAND 46 693 51
COLOUR_TEXT_REGION 46 693 51 693 51
STRAND 56 693 59
COLOUR_TEXT_REGION 56 693 59 693 51
STRAND 65 693 72
COLOUR_TEXT_REGION 65 693 72 693 51
STRAND 77 693 83
COLOUR_TEXT_REGION 77 693 83 693 51
STRAND 89 693 94
COLOUR_TEXT_REGION 89 693 94 693 51
STRAND 10 698 15
COLOUR_TEXT_REGION 10 698 15 698 51
STRAND 21 698 27
COLOUR_TEXT_REGION 21 698 27 698 51
STRAND 33 698 39
COLOUR_TEXT_REGION 33 698 39 698 51
STRAND 46 698 51
COLOUR_TEXT_REGION 46 698 51 698 51
STRAND 56 698 58
COLOUR_TEXT_REGION 56 698 58 698 51
STRAND 66 698 71
COLOUR_TEXT_REGION 66 698 71 698 51
STRAND 77 698 83
COLOUR_TEXT_REGION 77 698 83 698 51
STRAND 90 698 94
COLOUR_TEXT_REGION 90 698 94 698 51
STRAND 10 699 15
COLOUR_TEXT_REGION 10 699 15 699 51
STRAND 21 699 28
COLOUR_TEXT_REGION 21 699 28 699 51
STRAND 33 699 39
COLOUR_TEXT_REGION 33 699 39 699 51
STRAND 46 699 51
COLOUR_TEXT_REGION 46 699 51 699 51
STRAND 56 699 60
COLOUR_TEXT_REGION 56 699 60 699 51
STRAND 65 699 72
COLOUR_TEXT_REGION 65 699 72 699 51
STRAND 77 699 83
COLOUR_TEXT_REGION 77 699 83 699 51
STRAND 89 699 94
COLOUR_TEXT_REGION 89 699 94 699 51