SILENT_MODE
BLOCK_FILE jp_STyfQ12.concise.blc
MAX_NSEQ 712
MAX_INPUT_LEN 714
OUTPUT_FILE jp_STyfQ12.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 154 701   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 702 154 711 H SPACE
SUB_CHARS 1 702 154 711 E SPACE
SUB_CHARS 1 702 154 711 - SPACE
STRAND 3 705 4
COLOUR_TEXT_REGION 3 705 4 705 51
STRAND 14 705 21
COLOUR_TEXT_REGION 14 705 21 705 51
STRAND 48 705 52
COLOUR_TEXT_REGION 48 705 52 705 51
STRAND 74 705 82
COLOUR_TEXT_REGION 74 705 82 705 51
STRAND 111 705 116
COLOUR_TEXT_REGION 111 705 116 705 51
HELIX 24 705 40
COLOUR_TEXT_REGION 24 705 40 705 50
HELIX 57 705 68
COLOUR_TEXT_REGION 57 705 68 705 50
HELIX 89 705 106
COLOUR_TEXT_REGION 89 705 106 705 50
HELIX 121 705 128
COLOUR_TEXT_REGION 121 705 128 705 50
HELIX 135 705 152
COLOUR_TEXT_REGION 135 705 152 705 50
STRAND 3 710 4
COLOUR_TEXT_REGION 3 710 4 710 51
STRAND 14 710 20
COLOUR_TEXT_REGION 14 710 20 710 51
STRAND 48 710 52
COLOUR_TEXT_REGION 48 710 52 710 51
STRAND 74 710 82
COLOUR_TEXT_REGION 74 710 82 710 51
STRAND 111 710 116
COLOUR_TEXT_REGION 111 710 116 710 51
HELIX 24 710 40
COLOUR_TEXT_REGION 24 710 40 710 50
HELIX 57 710 68
COLOUR_TEXT_REGION 57 710 68 710 50
HELIX 89 710 105
COLOUR_TEXT_REGION 89 710 105 710 50
HELIX 121 710 128
COLOUR_TEXT_REGION 121 710 128 710 50
HELIX 135 710 152
COLOUR_TEXT_REGION 135 710 152 710 50
STRAND 3 711 5
COLOUR_TEXT_REGION 3 711 5 711 51
STRAND 14 711 21
COLOUR_TEXT_REGION 14 711 21 711 51
STRAND 49 711 52
COLOUR_TEXT_REGION 49 711 52 711 51
STRAND 74 711 78
COLOUR_TEXT_REGION 74 711 78 711 51
STRAND 110 711 116
COLOUR_TEXT_REGION 110 711 116 711 51
HELIX 24 711 40
COLOUR_TEXT_REGION 24 711 40 711 50
HELIX 56 711 68
COLOUR_TEXT_REGION 56 711 68 711 50
HELIX 90 711 106
COLOUR_TEXT_REGION 90 711 106 711 50
HELIX 121 711 128
COLOUR_TEXT_REGION 121 711 128 711 50
HELIX 135 711 152
COLOUR_TEXT_REGION 135 711 152 711 50