SILENT_MODE
BLOCK_FILE jp_uoZ99Xh.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_uoZ99Xh.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 147 27   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 28 147 37 H SPACE
SUB_CHARS 1 28 147 37 E SPACE
SUB_CHARS 1 28 147 37 - SPACE
STRAND 4 31 8
COLOUR_TEXT_REGION 4 31 8 31 51
STRAND 13 31 18
COLOUR_TEXT_REGION 13 31 18 31 51
STRAND 66 31 72
COLOUR_TEXT_REGION 66 31 72 31 51
STRAND 77 31 83
COLOUR_TEXT_REGION 77 31 83 31 51
STRAND 130 31 130
COLOUR_TEXT_REGION 130 31 130 31 51
HELIX 27 31 39
COLOUR_TEXT_REGION 27 31 39 31 50
HELIX 92 31 104
COLOUR_TEXT_REGION 92 31 104 31 50
HELIX 106 31 106
COLOUR_TEXT_REGION 106 31 106 31 50
HELIX 112 31 118
COLOUR_TEXT_REGION 112 31 118 31 50
HELIX 131 31 144
COLOUR_TEXT_REGION 131 31 144 31 50
STRAND 4 36 8
COLOUR_TEXT_REGION 4 36 8 36 51
STRAND 13 36 18
COLOUR_TEXT_REGION 13 36 18 36 51
STRAND 52 36 53
COLOUR_TEXT_REGION 52 36 53 36 51
STRAND 66 36 72
COLOUR_TEXT_REGION 66 36 72 36 51
STRAND 77 36 83
COLOUR_TEXT_REGION 77 36 83 36 51
HELIX 27 36 38
COLOUR_TEXT_REGION 27 36 38 36 50
HELIX 92 36 103
COLOUR_TEXT_REGION 92 36 103 36 50
HELIX 112 36 119
COLOUR_TEXT_REGION 112 36 119 36 50
HELIX 130 36 145
COLOUR_TEXT_REGION 130 36 145 36 50
STRAND 5 37 8
COLOUR_TEXT_REGION 5 37 8 37 51
STRAND 13 37 18
COLOUR_TEXT_REGION 13 37 18 37 51
STRAND 66 37 71
COLOUR_TEXT_REGION 66 37 71 37 51
STRAND 77 37 83
COLOUR_TEXT_REGION 77 37 83 37 51
STRAND 130 37 132
COLOUR_TEXT_REGION 130 37 132 37 51
HELIX 4 37 4
COLOUR_TEXT_REGION 4 37 4 37 50
HELIX 27 37 39
COLOUR_TEXT_REGION 27 37 39 37 50
HELIX 90 37 107
COLOUR_TEXT_REGION 90 37 107 37 50
HELIX 112 37 117
COLOUR_TEXT_REGION 112 37 117 37 50
HELIX 133 37 144
COLOUR_TEXT_REGION 133 37 144 37 50