Jpred secondary structure prediction results

QUERY           : MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINFNALFYLNKQPELYFVVTFAEQTLELNQETQQTLALVLKLWNSLHLSESILKNRQGQNEKNKHNYVDILQGIEDDLKKFEQYF : QUERY 
UniRef90_S6EG03 : MLEQFAIFTPGGQVVYQFNCLGKKFAEGQINRFISHFLSSPTSYKNDTANKYSIVEIGKASGRGFCTMFHVNRRPELYYVVTYAEQLLLLNQEAEETLKVGINLWKSLGLYEGIIDNVSGKGSRNEHNYTDVLADLQDEVSKFDKYL : UniRef90_S6EG03
UniRef90_C5E0Z1 : MLEQFVVFTSGGQVVYQFNCLGKKFAETQINRFISHLLSSPTIHNEDIAGNSNTSGGNKAQSRGFCSMYHVSRRPELYYVVTYAEQSLQLNQEAEETLQVGINLWESLGLSEGVLDNINGKGSRNERNCIDVLTDLEEELEKFDQYL : UniRef90_C5E0Z1
UniRef90_G8ZVC5 : MFEQFCIFTPQGDVIYQFNCAGKKFLESQINRFLSQYITSPAPNEETYKKYNLLSVSGGLSGRGFSAMFHISKQPELYYVVTYAEQSLQLNEEAAEILRLSISLWNSLNVNEEIVRNLSGRGSKNEHNFTDVVDGLDKDIETFDKYL : UniRef90_G8ZVC5
UniRef90_A7TFS7 : MFDQLVIFTPTGEVLYEYNPLNKKAMLNQVNAFISHLVNMPVSKKDDINSKLTINVTQEKSTRSFSAMFHISKQPELYFVITYAEQSLELNNEAESTLNLVLALWDSLDLNQSILENMKGKSGKNEHNYCEVLQDLNETIKTFDKYF : UniRef90_A7TFS7
UniRef90_G0VGX2 : MFDQLTIFTPQGQVLFKYNCQGKKFAELQINTFISKIITSPVTQRGSKFNILNITNDSLSKSRPFCSMFHVTKQPELYFVITYAEQTIDLDKEAEKTLDLALKLWDSLDLNEEIQSNLKNK------QHVDILYGMNEDLSKFDKYL : UniRef90_G0VGX2
UniRef90_G8BTK8 : MFDQLAIFTPQGEVLYQYNPSGKKFAETQVNAFINHLMNSPISKKNDVHSKFTVGDSSNSSKLNFSSMFYISKQPELYYLVTFPEQKLDLKNEAEETLNLALSLWDSLGLNDSILQNLKNRTEKNWHNYIDLLYGTENDFKKFKEYF : UniRef90_G8BTK8
UniRef90_C5DM67 : MIDQFVVFTLKGQVLYHFNPQGRKLAENHINKVISHLITSPSKKEES-------GKYLLFKLDNFAAACFIGKQPPLVYLVTYAAQDLELNQEAEQVLDLGFGLWDSLKLNNSVLQNLSGKGVKNRHNYTWILEGCDSNLNKFDEYF : UniRef90_C5DM67
UniRef90_G0W8F2 : MFEQLAIFTLQGIILYQYNCQGKKFSEHQINAFISKLITAPATRDTTTATNDSTLSTTNAYSRSFCSMFYKTKQPEIYFVITYAEQTIELDKEAEKTLDLATKLWNSLEINKSIQENL------NSRDHIDILDGVNDGISKFDQYF : UniRef90_G0W8F2
UniRef90_Q6FSE1 : MFEQLTIFTPQGEVLYYYNCYDRKFAEAQVNAVISHLLTSPISRDHGSSKYKLLSISVSKNAKPFTVLSHVSKQPELYFIITYPEPSMELNNEAQEVLDVAIALWDSLPINDIIIKAAKGTGKKNAFNCIDISGEISEDIEKFDNYL : UniRef90_Q6FSE1
UniRef90_I2GXE9 : MFEQLAILTPQGTVLYQYNPLGKKFQEAQINAFINQLIVSPATKKDDITKKFSVFVVNSSVSSKFCAMFHVNKQPEIYFVVTYAELSLELNRDSEELLKLAIDLWDSLELSTSVSENLQYKTNANEHSQVFILNDMEEDLSKYDKYL : UniRef90_I2GXE9
UniRef90_Q6CTR2 : MIDQFAVFTPAGNLLYGYNSLNKKFSETQINRFVSEFISQPVKD--------VTSKFPIISTSDTSYMYHETKQPHLFLVVSFASESIQLTAEAESVVVLATKLWESLGLNEVILDNISGKGKKNVHNFRFITEGASDQISKFGSYF : UniRef90_Q6CTR2
UniRef90_H2AV95 : MFEQLAIFNPQGQVFYEFNCQGKKFNETQINAFVSQLIVSPATKKDSIGSGRHTVVNVKANCRPFTAMFHVSKQPELYFVITYVEQTIQLNKEAEETLDAALGLWNSLDLKE----------------YLGSWDDLDEHLVKFDKYL : UniRef90_H2AV95
UniRef90_J7SBF4 : MFEQLAIFTPQGQVLYQFNCLGKKFAESQINAFLNQLILSPVTKKDSVGGKFNLVNVQSGATKSFCAMFYVAKQPEFYFVITFAEQNLQLDREAEETLTLALKLWESLGI------------------------------------- : UniRef90_J7SBF4
UniRef90_G8JRB0 : MIDQLAIFTVQGQLLCKYNALGKKFSEQQFNKFIHTLIAQ------SIATSNS---KFPTLSVDSHTMFHETKQPLYYVVSYSSSESLELNQEAEQVLNIAIKLWDSLGLNDAIRKNQHAKSKKNRHNYTWLLEGAEDKLLQFEQFF : UniRef90_G8JRB0
UniRef90_Q75F07 : MIDQFAIFTAQGQLLFQYASLKKRFSEQLCNKFIHELISRPPAINESFATVSVDSHTF---------IFRETKATRLFYVASYASPSLTLNHEAEQVVDMSLQLWDSLGLDSALRAAR-----KEPKGSI-TLEAVQEELFKFEKYF : UniRef90_Q75F07
UniRef90_K0K9P8 : MIDQFVIFTPSGLVLYRHAP--RKIPDSVINSLISNFISDNARSLDDVDTYNTGNSTIKYKSVN---------NPNIVVATVYP--SLTPLKYSEELVDVGVKLFVEL-LGDGIVENIG--------NQKHPLYQLEEERVKFDRYL : UniRef90_K0K9P8
UniRef90_W6MMX7 : MVDLFEIFAPSGKVVYKYE-QQKNFRPSIINSFVSDILISERKDLSADDDEHYDSADFTYTSDGYTVKYTKNDEPSLYFVVVYSSLT------------------------------------------------------------ : UniRef90_W6MMX7
UniRef90_C4R0H7 : MSEQFLIFTPKGTVLFKDE--DRKVPDRVVNGLISDIFISQRKTLTGSVNEFEDDDVGSYSLDGYTIKYVSSSQPTCYFTSCHSSLVNVPN-EGQFLKDIQT-LWEEL--------------------------------------- : UniRef90_C4R0H7
UniRef90_Q178J5 : MLDLFTIFTKGGIVLWYFRGTNQIFAPS-VNALIRSVILQERS-----GVYDHDGLSLQYKLDN---------EFELVFVVAF-QKILQLSYIDKFLSDVHLEFRDKYK-NDLRVENRNYSNFNFQDDFTRILEQAEK--------- : UniRef90_Q178J5
UniRef90_E9EN95 : MLDTFEIITTNGVVLWKYAPIN----SSVVNSFISDTFIEEKSGGSVVGDSQSAATNPPYKSDQHTLKWTVVKELGVIFVAVYRS----LLH-----LSWVDKLVDNI---KTIFINLYGEQLKKPHTTIVECTG-------FDNYF : UniRef90_E9EN95
UniRef90_M7SU22 : MLDTFEILTTSGVVLWSYAPIN----PSIINNFIADVFIEERAIAAGAKDNQSTSSNPPYKADQHTLKWTFVKELGIIFVAVYRSL------------------------------------------------------------- : UniRef90_M7SU22
UniRef90_U4KWW9 : -LDSFEILTTSGILLWKYTPV----SPLIVNSFISDVLIEERVQPGTDGK--------SYKKDSYTLKWTLSNDFGLIFIAVY--QSLLQLTWIDELLDTVKKLFTSL--------------------------------------- : UniRef90_U4KWW9
UniRef90_N1JHC1 : MLDSFEIFTASGIVLWSYSPINR----AIVNSFITDFIEERSPQNIRITNDLSATKNPSYKHNKHTIKWTTVKELGLIFVAVYRSL------------------------------------------------------------- : UniRef90_N1JHC1

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141---- :
OrigSeq         : MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINFNALFYLNKQPELYFVVTFAEQTLELNQETQQTLALVLKLWNSLHLSESILKNRQGQNEKNKHNYVDILQGIEDDLKKFEQYF : OrigSeq

Jnet            : ---EEEEE----EEEEEE--------HHHHHHHHHHHHH--------------------------EEEEEEE----EEEEEEE--------HHHHHHHHHHHHH-H-----HHHHHHH-----------EHHHHHHHHHHHHHH--- : Jnet
jhmm            : ---EEEEE----EEEEEE--------HHHHHHHHHHHH-------------EE------------EEEEEEE----EEEEEEE--------HHHHHHHHHHHH--------HHHHHHHH----------HHHHHHHHHHHHHHHH-- : jhmm
jpssm           : ---HEEEE----EEEEEE--------HHHHHHHHHHHHH--------------------------EEEEEE-----EEEEEEE------HHHHHHHHHHHHHHHHHH----HHHHHH------------EEEHHHHHHHHHHHH--- : jpssm

Lupas 14        : --------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---BBBBBBB-B-BBB-BBB----BB--BBB-BB--BB---B-----------B---B------BBBBBB-B--B-BBBBBBBB---B-B---B--BB-BBB-BB--B-BB-BB--BB----------BBBBB--B---B--B---- : Jnet_25
Jnet_5          : ----B-B----B-BBB-------------B--BB---B----------------------------BBB-------BBBBBB-----------B--B---B--B---------B------------------B--B----------- : Jnet_5
Jnet_0          : ----B---------B---------------------------------------------------------------BBB-------------------B--B------------------------------------------- : Jnet_0
Jnet Rel        : 981323325885589884477887636899999999860367777777777213321465467744899860888558998744788753178999988886521114663788874307777778774013366665788861399 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.