SILENT_MODE
BLOCK_FILE jp_J7IBeoU.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_J7IBeoU.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 457 29   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 30 457 39 H SPACE
SUB_CHARS 1 30 457 39 E SPACE
SUB_CHARS 1 30 457 39 - SPACE
STRAND 20 33 21
COLOUR_TEXT_REGION 20 33 21 33 51
STRAND 74 33 77
COLOUR_TEXT_REGION 74 33 77 33 51
STRAND 81 33 85
COLOUR_TEXT_REGION 81 33 85 33 51
STRAND 101 33 106
COLOUR_TEXT_REGION 101 33 106 33 51
STRAND 109 33 113
COLOUR_TEXT_REGION 109 33 113 33 51
STRAND 124 33 127
COLOUR_TEXT_REGION 124 33 127 33 51
STRAND 160 33 164
COLOUR_TEXT_REGION 160 33 164 33 51
STRAND 255 33 258
COLOUR_TEXT_REGION 255 33 258 33 51
STRAND 299 33 302
COLOUR_TEXT_REGION 299 33 302 33 51
STRAND 424 33 427
COLOUR_TEXT_REGION 424 33 427 33 51
HELIX 5 33 15
COLOUR_TEXT_REGION 5 33 15 33 50
HELIX 31 33 42
COLOUR_TEXT_REGION 31 33 42 33 50
HELIX 55 33 71
COLOUR_TEXT_REGION 55 33 71 33 50
HELIX 87 33 96
COLOUR_TEXT_REGION 87 33 96 33 50
HELIX 136 33 152
COLOUR_TEXT_REGION 136 33 152 33 50
HELIX 173 33 193
COLOUR_TEXT_REGION 173 33 193 33 50
HELIX 207 33 215
COLOUR_TEXT_REGION 207 33 215 33 50
HELIX 239 33 250
COLOUR_TEXT_REGION 239 33 250 33 50
HELIX 271 33 288
COLOUR_TEXT_REGION 271 33 288 33 50
HELIX 307 33 323
COLOUR_TEXT_REGION 307 33 323 33 50
HELIX 342 33 357
COLOUR_TEXT_REGION 342 33 357 33 50
HELIX 381 33 393
COLOUR_TEXT_REGION 381 33 393 33 50
HELIX 397 33 413
COLOUR_TEXT_REGION 397 33 413 33 50
HELIX 437 33 452
COLOUR_TEXT_REGION 437 33 452 33 50
STRAND 20 38 24
COLOUR_TEXT_REGION 20 38 24 38 51
STRAND 73 38 77
COLOUR_TEXT_REGION 73 38 77 38 51
STRAND 80 38 85
COLOUR_TEXT_REGION 80 38 85 38 51
STRAND 102 38 106
COLOUR_TEXT_REGION 102 38 106 38 51
STRAND 109 38 113
COLOUR_TEXT_REGION 109 38 113 38 51
STRAND 124 38 126
COLOUR_TEXT_REGION 124 38 126 38 51
STRAND 160 38 164
COLOUR_TEXT_REGION 160 38 164 38 51
STRAND 255 38 259
COLOUR_TEXT_REGION 255 38 259 38 51
STRAND 298 38 301
COLOUR_TEXT_REGION 298 38 301 38 51
STRAND 358 38 358
COLOUR_TEXT_REGION 358 38 358 38 51
STRAND 424 38 427
COLOUR_TEXT_REGION 424 38 427 38 51
HELIX 4 38 15
COLOUR_TEXT_REGION 4 38 15 38 50
HELIX 31 38 41
COLOUR_TEXT_REGION 31 38 41 38 50
HELIX 55 38 71
COLOUR_TEXT_REGION 55 38 71 38 50
HELIX 87 38 97
COLOUR_TEXT_REGION 87 38 97 38 50
HELIX 135 38 152
COLOUR_TEXT_REGION 135 38 152 38 50
HELIX 173 38 193
COLOUR_TEXT_REGION 173 38 193 38 50
HELIX 207 38 215
COLOUR_TEXT_REGION 207 38 215 38 50
HELIX 240 38 250
COLOUR_TEXT_REGION 240 38 250 38 50
HELIX 271 38 287
COLOUR_TEXT_REGION 271 38 287 38 50
HELIX 307 38 323
COLOUR_TEXT_REGION 307 38 323 38 50
HELIX 342 38 357
COLOUR_TEXT_REGION 342 38 357 38 50
HELIX 382 38 394
COLOUR_TEXT_REGION 382 38 394 38 50
HELIX 397 38 414
COLOUR_TEXT_REGION 397 38 414 38 50
HELIX 437 38 453
COLOUR_TEXT_REGION 437 38 453 38 50
STRAND 75 39 76
COLOUR_TEXT_REGION 75 39 76 39 51
STRAND 81 39 85
COLOUR_TEXT_REGION 81 39 85 39 51
STRAND 100 39 105
COLOUR_TEXT_REGION 100 39 105 39 51
STRAND 108 39 113
COLOUR_TEXT_REGION 108 39 113 39 51
STRAND 123 39 127
COLOUR_TEXT_REGION 123 39 127 39 51
STRAND 159 39 164
COLOUR_TEXT_REGION 159 39 164 39 51
STRAND 228 39 229
COLOUR_TEXT_REGION 228 39 229 39 51
STRAND 255 39 256
COLOUR_TEXT_REGION 255 39 256 39 51
STRAND 300 39 302
COLOUR_TEXT_REGION 300 39 302 39 51
STRAND 424 39 426
COLOUR_TEXT_REGION 424 39 426 39 51
HELIX 8 39 15
COLOUR_TEXT_REGION 8 39 15 39 50
HELIX 30 39 42
COLOUR_TEXT_REGION 30 39 42 39 50
HELIX 55 39 72
COLOUR_TEXT_REGION 55 39 72 39 50
HELIX 87 39 96
COLOUR_TEXT_REGION 87 39 96 39 50
HELIX 139 39 152
COLOUR_TEXT_REGION 139 39 152 39 50
HELIX 173 39 193
COLOUR_TEXT_REGION 173 39 193 39 50
HELIX 209 39 214
COLOUR_TEXT_REGION 209 39 214 39 50
HELIX 234 39 250
COLOUR_TEXT_REGION 234 39 250 39 50
HELIX 273 39 288
COLOUR_TEXT_REGION 273 39 288 39 50
HELIX 307 39 323
COLOUR_TEXT_REGION 307 39 323 39 50
HELIX 329 39 331
COLOUR_TEXT_REGION 329 39 331 39 50
HELIX 342 39 357
COLOUR_TEXT_REGION 342 39 357 39 50
HELIX 381 39 393
COLOUR_TEXT_REGION 381 39 393 39 50
HELIX 398 39 412
COLOUR_TEXT_REGION 398 39 412 39 50
HELIX 437 39 452
COLOUR_TEXT_REGION 437 39 452 39 50