QUERY : IVTKDYSKESRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHHD : QUERY
UniRef90_Q4W8J9 : IVTKDYSKESRVNENSKYDSPISDWYLSSVLNRLGDQIYYAKELTNKYEYGEKEYKKAIDKLMTRVLGEDQYLLEKKKAQYEVYKKWFEKHKSENPNSDLKMTKFHDFDIYRLSMKEYNEIHQSIKEAVDDFNSEVKEIQYKEKD : UniRef90_Q4W8J9
UniRef90_C4B4T1 : IVGKDYSKESRVKEESKYGANISSWYLNDMLQKLGDQIYNAKELTNRYEYGEKDYKQASDKLMTRVLGEDQYLLEKKKEQYEVYKKWYQKYKTENPQSDLKMTKFHDFEMYKLTMNEYNDIQRSLKDAVDEFNNEVKDIQSKNKD : UniRef90_C4B4T1
UniRef90_C1IDV0 : IVTKDYSKESRVNENSKYDTPISDTYYWGVIKNLESQFAEAIDLLEDYQYGEKEYKDAKDKLMTRLLGEDQYLLKKKIDEYEVYKESFKKFKEKNPNDNSKMSSFYNYNLYNFTMKEYNDIRHSLKEAIDQFRKDVDDIHSKKVD : UniRef90_C1IDV0
UniRef90_Q4W8K7 : IVTKDYSGKSQVNAGSKNGTPISNGYFWGKIDSLESQFSKALAIIEEYQYGEKEYKDAKDKFMDRILSEDQYLLEKKKALYEKYKEWYKKHKEINPTYP-KMQTFHEFSVYNLTMEEYNEISKSLKDAEEEFRKNVREVQEKEV- : UniRef90_Q4W8K7
UniRef90_B6VQV8 : IVTKDYSGKSQVNAGSKNSASISDSYYWDIIKNLELQFTAALDLLEDYQYGEKEYEKAKDQLMTRILSEDQYLLEKKIKEYDKYKDLYKEYMSKNPTSKVKRANFDQYNIEDLREKEYNDLLSSIKDAVETFKSDVQKIEYENKE : UniRef90_B6VQV8
UniRef90_C4B4P0 : IVTKDYSKESRVNENSKKGATVSDYYYWKIIDSLEAQFTGAIDLLEDYKYGDPIYKEAKDRLMTRVLGEDQYLLKKKIDEYELYKKWYK-----SSNKNTNMLTFHKYNLYNLTMNEYNDIFNSLKDAVYQFNKEVKEIEHKNVD : UniRef90_C4B4P0
UniRef90_A0A019Z5T3 : IVGKDYSGKSQVNADSKNGALIDSRYYWEKIEALEKQFSSALALTDEYQYGGNEYKDAKYKLMERILGEDQYLLKKKIDEYDYYKKWY---KATYPNDNSKMYSFHKYNVYYLTMNEYNEITNSLKDAVEKFKNEVKDIQSKNED : UniRef90_A0A019Z5T3
UniRef90_C4B4P4 : IVTKDYSGKSQVNAGSKNGTLIDSRYLNSALYYLEDYIIYAIGLTNKYEYGDNIYKEAKDRLLEKVLREDQYLLERKKSQYEDYKQWYANYKKENPRTDLKMANFHKYNLEELSMKEYNELQNALKGALDDFHREVKDIKDKNSD : UniRef90_C4B4P4
UniRef90_C4B811 : IVTKDYNGKSQVNAGSKNGKQIADGYYWGIIENLENQFYNIFHLLDQHKYAEKEYKDAVDKLKTRVLEEDQYLLERKKEKYEIYKELYKKYKKENPNTQVKMKAFDKYDLGDLTMEEYNDLSKLLTKALDNFKLEVKKIESENPD : UniRef90_C4B811
UniRef90_H6VQN6 : IVTKDYSKESRVKENSKYDSPMSNWYYWGKVKSLESQFADAIDIIEDYQYGEKEYKDAKDKLMTRILGEDQYLLKKKIEEYKQYRERYLKAG-------LSPVKFYDYNLYDFTMKEYNDIHQSLKDAVEEFYQEVKHIQSKNSD : UniRef90_H6VQN6
UniRef90_A0A034HFH5 : IVNDNYTGQSQVKENSKDSARISDDLYWKTFDNLEKQFENALNLLKEYQYSGEEYKEARDKLMTSVVSENQYLLDKKFKEYEAYKAAFPNFKAKDHT--LKRLSFNNYDIRDLRQGEYNDIRASLKSAVETFLKDVSAVQSKH-- : UniRef90_A0A034HFH5
UniRef90_H3ZU75 : IVTKDYSKESRVNENSKYDTPIPDWYLGSILNRLGDQIYYAKELTNKYEYGEKEYKQAIDKLMTRVLGEDHYLLEKRKHNMKHTKNGLKNIKVK--------------------------------------------------- : UniRef90_H3ZU75
UniRef90_W7NMF6 : IVTKDYSKESRVNENSKYGTLISDWYLKGRLTSLESQFINALDILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKS------------------------------------------------------------------ : UniRef90_W7NMF6
UniRef90_F9JXR5 : IVTKDYSGKSQVNAGSKNGKQIADGYYWGIIENLENQFYNIFHLLDQHKYAEKEYKDALDKLKTRVLEEDQYLLERKKKNTKFIKNYIKNTKK---------------------------------------------------- : UniRef90_F9JXR5
UniRef90_A0A011WEE8 : IVTKDYSKESRVNEKSKKGATVSDYYYWKIIDSLEAQFTGAIDLLEDYKYGDPIYKEAKDRLMTRVLGEDQYLL----------------------------------------------------------------------- : UniRef90_A0A011WEE8
UniRef90_W9ES82 : IVTKDYNGKSQVKKESKNGTLIDSRYYWEKIEALEKQFSSALALTDEYQYGGNEYKEAKDKLMERILGEDQYLLKKK-------------------------------------------------------------------- : UniRef90_W9ES82
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-- :
OrigSeq : IVTKDYSKESRVNENSKYGTLISDWYLKGRLTSLESQFINALGILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQHHD : OrigSeq
Jnet : ---------EEE-----------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- : Jnet
jhmm : ---------EEE-----------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- : jhmm
jpssm : ------------------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- : jpssm
Lupas 14 : --------------------------------------------------------------------------------cccccccccccccc-----------------------cccccccccccccc-------------- : Lupas 14
Lupas 21 : -------------------------------------------------------------------------ccccccccccccccccccccc--------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------cccccccccccccccccccccccccccc--- : Lupas 28
Jnet_25 : -B---B---B-B---B-----BB--BBB-BB--B--BB--BB-BB--B-BB---B--B---BB--BB----BBB------B--B--BB--B--------B----B--B-B--B---BB--B--BB--BB--B---B--B------ : Jnet_25
Jnet_5 : --------------------------B---B--B---B--B--BB----------------B---B---------------------B---------------------B--B-------B---B--B---B------------- : Jnet_5
Jnet_0 : ------------------------------------------------------------------------------------------------------------------------B------------------------ : Jnet_0
Jnet Rel : 8777777760105677777777612799999999999999999997527887337999999999986104078999873279999999985167777777655457776321157899999999999999999999998616999 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.